Variant report

Variant	rs201455
Chromosome Location	chr7:101740212-101740213
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:101735567..101738599-chr7:101738712..101740607,3	K562	blood:
2	chr7:101736386..101738941-chr7:101739075..101743072,3	MCF-7	breast:
3	chr7:101738827..101741081-chr7:101742643..101744286,2	MCF-7	breast:

Extended variants
information (count: 81 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10953358	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1637257	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16869536	1.00[JPT][hapmap]
rs169307	1.00[CEU][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1734879	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1902	0.92[CEU][hapmap]
rs201435	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs201436	0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs201438	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs201440	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs201441	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201442	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201443	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201445	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201446	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201447	1.00[CEU][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201448	0.90[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201449	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201450	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201451	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201452	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201453	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201454	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201456	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201457	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201458	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201459	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201461	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201464	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs201466	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs201468	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201469	1.00[CEU][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201470	0.97[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201471	0.97[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201472	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs201475	1.00[CEU][hapmap];0.94[YRI][hapmap];0.97[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201477	1.00[CEU][hapmap];0.94[YRI][hapmap];0.88[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201478	0.97[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201480	0.97[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs201481	0.90[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs201482	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs201485	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs201486	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs201489	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs201490	1.00[CEU][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs201491	0.85[CEU][hapmap]
rs201492	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs201493	0.96[CEU][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs201497	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs201498	1.00[CEU][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs201500	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs201502	0.80[ASW][hapmap];1.00[CEU][hapmap];0.93[LWK][hapmap];0.81[MKK][hapmap];0.93[TSI][hapmap];0.94[YRI][hapmap];0.91[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs201503	0.90[ASW][hapmap];1.00[CEU][hapmap];0.93[LWK][hapmap];0.93[TSI][hapmap];0.94[YRI][hapmap];0.91[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs201504	0.84[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs201505	0.91[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs201507	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs201508	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs201509	1.00[CEU][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs201511	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs201522	1.00[CEU][hapmap];0.84[LWK][hapmap];0.91[TSI][hapmap];0.85[EUR][1000 genomes]
rs201526	0.86[EUR][1000 genomes]
rs201527	0.92[CEU][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs201529	0.83[EUR][1000 genomes]
rs2529095	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2529373	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2734782	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34247954	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs380175	0.82[EUR][1000 genomes]
rs382228	0.84[EUR][1000 genomes]
rs382270	1.00[JPT][hapmap]
rs382934	1.00[JPT][hapmap]
rs386207	1.00[JPT][hapmap]
rs395848	1.00[JPT][hapmap]
rs417013	0.81[CEU][hapmap];0.84[LWK][hapmap]
rs424028	0.84[ASN][1000 genomes]
rs436287	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs6950791	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs6970800	0.84[EUR][1000 genomes]
rs6976246	1.00[JPT][hapmap]
rs7788329	1.00[JPT][hapmap]
rs7800374	1.00[JPT][hapmap]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs201455	OR52K2	trans	parietal	SCAN
rs201455	ZCWPW1	cis	cerebellum	SCAN
rs201455	EPHB4	cis	parietal	SCAN
rs201455	CLDN15	cis	parietal	SCAN
rs201455	CUX1	cis	cerebellum	SCAN

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101708200-101765000	Weak transcription	Small Intestine	intestine
2	chr7:101715200-101749800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr7:101715400-101749600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr7:101715600-101745200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr7:101715600-101745200	Weak transcription	HSMMtube	muscle
6	chr7:101715800-101741000	Weak transcription	Gastric	stomach
7	chr7:101715800-101741200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr7:101716000-101743000	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr7:101716000-101746600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr7:101716400-101758600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr7:101717800-101741200	Weak transcription	Pancreas	Pancrea
12	chr7:101724000-101741600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr7:101725400-101740400	Weak transcription	Left Ventricle	heart
14	chr7:101725600-101740800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr7:101725600-101741000	Weak transcription	Right Ventricle	heart
16	chr7:101725600-101741200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr7:101726200-101741000	Weak transcription	Liver	Liver
18	chr7:101726200-101747800	Weak transcription	Osteobl	bone
19	chr7:101729000-101740400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr7:101729000-101743600	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr7:101733000-101740600	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr7:101733000-101741000	Weak transcription	K562	blood
23	chr7:101733000-101744200	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr7:101733200-101740400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr7:101733200-101740400	Weak transcription	Spleen	Spleen
26	chr7:101733200-101741000	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr7:101733200-101741000	Weak transcription	Aorta	Aorta
28	chr7:101733200-101741000	Weak transcription	Fetal Lung	lung
29	chr7:101733200-101741000	Weak transcription	Ovary	ovary
30	chr7:101733200-101741200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr7:101733200-101741200	Weak transcription	Lung	lung
32	chr7:101733200-101741400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr7:101733200-101743600	Weak transcription	Primary B cells from cord blood	blood
34	chr7:101733200-101749600	Weak transcription	Esophagus	oesophagus
35	chr7:101733200-101758600	Weak transcription	Psoas Muscle	Psoas
36	chr7:101733400-101740800	Weak transcription	Primary hematopoietic stem cells	blood
37	chr7:101733400-101741200	Weak transcription	Primary B cells from peripheral blood	blood
38	chr7:101733400-101741400	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr7:101733400-101743600	Weak transcription	GM12878-XiMat	blood
40	chr7:101733600-101740400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr7:101734400-101741000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr7:101735800-101740800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr7:101735800-101741800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr7:101735800-101744200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr7:101736600-101741800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr7:101736800-101741600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr7:101737200-101745800	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr7:101737400-101740400	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr7:101737400-101742600	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr7:101737400-101746200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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