Variant report

Variant	rs201459
Chromosome Location	chr7:101741502-101741503
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:101740784..101741600-chr7:101768361..101769008,2	MCF-7	breast:
2	chr7:101737392..101739320-chr7:101741170..101743040,2	K562	blood:
3	chr7:101736386..101738941-chr7:101739075..101743072,3	MCF-7	breast:
4	chr7:101459914..101461837-chr7:101741354..101743788,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000257923	Chromatin interaction

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10953358	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1637257	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16869536	1.00[JPT][hapmap]
rs169307	1.00[CEU][hapmap];0.94[YRI][hapmap];0.97[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1734879	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1902	0.92[CEU][hapmap]
rs201435	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs201436	0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs201438	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs201440	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs201441	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201442	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201443	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201445	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201446	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201447	1.00[CEU][hapmap];0.94[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201448	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201449	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201450	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201451	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201452	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201453	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201454	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201455	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201456	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201458	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201461	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201464	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs201466	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs201468	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201469	1.00[CEU][hapmap];0.94[YRI][hapmap];0.97[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201470	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201471	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201472	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs201475	1.00[CEU][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201477	1.00[CEU][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201478	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201480	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs201481	0.93[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs201482	0.93[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs201485	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs201486	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs201489	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs201490	1.00[CEU][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs201491	0.84[CEU][hapmap]
rs201492	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs201493	0.96[CEU][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs201497	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs201498	1.00[CEU][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs201500	0.91[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs201502	1.00[CEU][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs201503	1.00[CEU][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs201504	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs201505	0.94[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs201507	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs201508	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs201509	1.00[CEU][hapmap];0.94[YRI][hapmap];0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs201511	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs201522	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs201526	0.86[EUR][1000 genomes]
rs201527	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs201529	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2529095	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2529373	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2734782	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34247954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs380175	0.82[EUR][1000 genomes]
rs382228	0.84[EUR][1000 genomes]
rs382270	1.00[JPT][hapmap]
rs382934	1.00[JPT][hapmap]
rs386207	1.00[JPT][hapmap]
rs395848	1.00[JPT][hapmap]
rs424028	0.84[ASN][1000 genomes]
rs436287	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs6950791	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs6970800	0.84[EUR][1000 genomes]
rs6976246	1.00[JPT][hapmap]
rs7788329	1.00[JPT][hapmap]
rs7800374	1.00[JPT][hapmap]

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101708200-101765000	Weak transcription	Small Intestine	intestine
2	chr7:101715200-101749800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr7:101715400-101749600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr7:101715600-101745200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr7:101715600-101745200	Weak transcription	HSMMtube	muscle
6	chr7:101716000-101743000	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr7:101716000-101746600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr7:101716400-101758600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr7:101724000-101741600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:101726200-101747800	Weak transcription	Osteobl	bone
11	chr7:101729000-101743600	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr7:101733000-101744200	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr7:101733200-101743600	Weak transcription	Primary B cells from cord blood	blood
14	chr7:101733200-101749600	Weak transcription	Esophagus	oesophagus
15	chr7:101733200-101758600	Weak transcription	Psoas Muscle	Psoas
16	chr7:101733400-101743600	Weak transcription	GM12878-XiMat	blood
17	chr7:101735800-101741800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr7:101735800-101744200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr7:101736600-101741800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr7:101736800-101741600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr7:101737200-101745800	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr7:101737400-101742600	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr7:101737400-101746200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr7:101737400-101747600	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr7:101737400-101754400	Weak transcription	Brain Angular Gyrus	brain
26	chr7:101737600-101743200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr7:101737600-101743600	Weak transcription	NHEK	skin
28	chr7:101737800-101742400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr7:101738000-101749800	Weak transcription	Fetal Heart	heart
30	chr7:101738200-101742400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr7:101738200-101747200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr7:101738200-101751800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr7:101738200-101754400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr7:101738400-101742400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr7:101738400-101745800	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr7:101738400-101760800	Weak transcription	NHDF-Ad	bronchial
37	chr7:101738600-101758400	Weak transcription	Colon Smooth Muscle	Colon
38	chr7:101738600-101763600	Strong transcription	Monocytes-CD14+_RO01746	blood
39	chr7:101738800-101741800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr7:101738800-101754400	Weak transcription	Brain Germinal Matrix	brain
41	chr7:101738800-101763800	Strong transcription	Primary neutrophils fromperipheralblood	blood
42	chr7:101738800-101764200	Strong transcription	Fetal Thymus	thymus
43	chr7:101739000-101760600	Weak transcription	NHLF	lung
44	chr7:101739200-101760600	Weak transcription	HSMM	muscle
45	chr7:101739200-101763400	Strong transcription	Primary monocytes fromperipheralblood	blood
46	chr7:101739400-101742200	Enhancers	Placenta	Placenta
47	chr7:101739400-101745800	Weak transcription	Brain Substantia Nigra	brain
48	chr7:101739400-101751800	Strong transcription	Primary T cells from cord blood	blood
49	chr7:101739600-101743800	Weak transcription	Primary T helper cells PMA-I stimulated	--
50	chr7:101739600-101752000	Strong transcription	Thymus	Thymus

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