Variant report

Variant	rs201460
Chromosome Location	chr7:101741571-101741572
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:101740784..101741600-chr7:101768361..101769008,2	MCF-7	breast:
2	chr7:101737392..101739320-chr7:101741170..101743040,2	K562	blood:
3	chr7:101736386..101738941-chr7:101739075..101743072,3	MCF-7	breast:
4	chr7:101459914..101461837-chr7:101741354..101743788,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000257923	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs16869536	1.00[JPT][hapmap]
rs201435	1.00[JPT][hapmap]
rs201436	1.00[JPT][hapmap]
rs201441	1.00[JPT][hapmap]
rs201442	1.00[JPT][hapmap]
rs201443	1.00[JPT][hapmap]
rs201445	1.00[JPT][hapmap]
rs201448	1.00[JPT][hapmap]
rs201449	1.00[JPT][hapmap]
rs201450	1.00[JPT][hapmap]
rs201454	1.00[JPT][hapmap]
rs201455	1.00[JPT][hapmap]
rs201456	1.00[JPT][hapmap]
rs201458	1.00[JPT][hapmap]
rs201459	1.00[JPT][hapmap]
rs201465	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201468	1.00[JPT][hapmap]
rs382270	1.00[JPT][hapmap]
rs382934	1.00[JPT][hapmap]
rs386207	1.00[JPT][hapmap]
rs395848	1.00[JPT][hapmap]
rs58179454	0.95[ASN][1000 genomes]
rs60679727	0.95[ASN][1000 genomes]
rs6976246	1.00[JPT][hapmap]
rs73408014	0.86[ASN][1000 genomes]
rs7788329	1.00[JPT][hapmap]
rs7800374	1.00[JPT][hapmap]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs201460	MBLAC1	cis	cerebellum	SCAN
rs201460	PMS2L1	cis	cerebellum	SCAN
rs201460	RELN	cis	cerebellum	SCAN
rs201460	ATXN7L1	cis	parietal	SCAN
rs201460	BHLHA15	cis	cerebellum	SCAN

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101708200-101765000	Weak transcription	Small Intestine	intestine
2	chr7:101715200-101749800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr7:101715400-101749600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr7:101715600-101745200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr7:101715600-101745200	Weak transcription	HSMMtube	muscle
6	chr7:101716000-101743000	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr7:101716000-101746600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr7:101716400-101758600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr7:101724000-101741600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:101726200-101747800	Weak transcription	Osteobl	bone
11	chr7:101729000-101743600	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr7:101733000-101744200	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr7:101733200-101743600	Weak transcription	Primary B cells from cord blood	blood
14	chr7:101733200-101749600	Weak transcription	Esophagus	oesophagus
15	chr7:101733200-101758600	Weak transcription	Psoas Muscle	Psoas
16	chr7:101733400-101743600	Weak transcription	GM12878-XiMat	blood
17	chr7:101735800-101741800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr7:101735800-101744200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr7:101736600-101741800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr7:101736800-101741600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr7:101737200-101745800	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr7:101737400-101742600	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr7:101737400-101746200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr7:101737400-101747600	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr7:101737400-101754400	Weak transcription	Brain Angular Gyrus	brain
26	chr7:101737600-101743200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr7:101737600-101743600	Weak transcription	NHEK	skin
28	chr7:101737800-101742400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr7:101738000-101749800	Weak transcription	Fetal Heart	heart
30	chr7:101738200-101742400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr7:101738200-101747200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr7:101738200-101751800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr7:101738200-101754400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr7:101738400-101742400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr7:101738400-101745800	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr7:101738400-101760800	Weak transcription	NHDF-Ad	bronchial
37	chr7:101738600-101758400	Weak transcription	Colon Smooth Muscle	Colon
38	chr7:101738600-101763600	Strong transcription	Monocytes-CD14+_RO01746	blood
39	chr7:101738800-101741800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr7:101738800-101754400	Weak transcription	Brain Germinal Matrix	brain
41	chr7:101738800-101763800	Strong transcription	Primary neutrophils fromperipheralblood	blood
42	chr7:101738800-101764200	Strong transcription	Fetal Thymus	thymus
43	chr7:101739000-101760600	Weak transcription	NHLF	lung
44	chr7:101739200-101760600	Weak transcription	HSMM	muscle
45	chr7:101739200-101763400	Strong transcription	Primary monocytes fromperipheralblood	blood
46	chr7:101739400-101742200	Enhancers	Placenta	Placenta
47	chr7:101739400-101745800	Weak transcription	Brain Substantia Nigra	brain
48	chr7:101739400-101751800	Strong transcription	Primary T cells from cord blood	blood
49	chr7:101739600-101743800	Weak transcription	Primary T helper cells PMA-I stimulated	--
50	chr7:101739600-101752000	Strong transcription	Thymus	Thymus

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