Variant report

Variant	rs201464
Chromosome Location	chr7:101741990-101741991
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:101737392..101739320-chr7:101741170..101743040,2	K562	blood:
2	chr7:101736386..101738941-chr7:101739075..101743072,3	MCF-7	breast:
3	chr7:101459914..101461837-chr7:101741354..101743788,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000257923	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10953358	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1637257	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs169307	0.83[EUR][1000 genomes]
rs1734879	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs201435	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs201436	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs201438	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs201440	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs201441	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs201442	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs201443	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs201445	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs201446	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs201447	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs201448	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs201449	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs201450	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs201451	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs201452	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs201453	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs201454	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs201455	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs201456	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs201457	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs201458	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs201459	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs201461	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs201466	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs201468	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs201469	0.83[EUR][1000 genomes]
rs201470	0.83[EUR][1000 genomes]
rs201471	0.83[EUR][1000 genomes]
rs201472	0.83[EUR][1000 genomes]
rs201475	0.83[EUR][1000 genomes]
rs201477	0.83[EUR][1000 genomes]
rs201478	0.83[EUR][1000 genomes]
rs201480	0.82[EUR][1000 genomes]
rs201481	0.83[EUR][1000 genomes]
rs201482	0.82[EUR][1000 genomes]
rs201485	0.82[EUR][1000 genomes]
rs201486	0.80[EUR][1000 genomes]
rs201489	0.82[EUR][1000 genomes]
rs201490	0.81[EUR][1000 genomes]
rs201492	0.81[EUR][1000 genomes]
rs201493	0.80[EUR][1000 genomes]
rs201497	0.80[EUR][1000 genomes]
rs201500	0.80[EUR][1000 genomes]
rs201502	0.80[EUR][1000 genomes]
rs201503	0.80[EUR][1000 genomes]
rs201505	0.80[EUR][1000 genomes]
rs2529095	0.82[EUR][1000 genomes]
rs2529373	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2734782	0.81[EUR][1000 genomes]
rs34247954	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101708200-101765000	Weak transcription	Small Intestine	intestine
2	chr7:101715200-101749800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr7:101715400-101749600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr7:101715600-101745200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr7:101715600-101745200	Weak transcription	HSMMtube	muscle
6	chr7:101716000-101743000	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr7:101716000-101746600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr7:101716400-101758600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr7:101726200-101747800	Weak transcription	Osteobl	bone
10	chr7:101729000-101743600	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr7:101733000-101744200	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr7:101733200-101743600	Weak transcription	Primary B cells from cord blood	blood
13	chr7:101733200-101749600	Weak transcription	Esophagus	oesophagus
14	chr7:101733200-101758600	Weak transcription	Psoas Muscle	Psoas
15	chr7:101733400-101743600	Weak transcription	GM12878-XiMat	blood
16	chr7:101735800-101744200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr7:101737200-101745800	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr7:101737400-101742600	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr7:101737400-101746200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr7:101737400-101747600	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr7:101737400-101754400	Weak transcription	Brain Angular Gyrus	brain
22	chr7:101737600-101743200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr7:101737600-101743600	Weak transcription	NHEK	skin
24	chr7:101737800-101742400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr7:101738000-101749800	Weak transcription	Fetal Heart	heart
26	chr7:101738200-101742400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr7:101738200-101747200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr7:101738200-101751800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr7:101738200-101754400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr7:101738400-101742400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr7:101738400-101745800	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr7:101738400-101760800	Weak transcription	NHDF-Ad	bronchial
33	chr7:101738600-101758400	Weak transcription	Colon Smooth Muscle	Colon
34	chr7:101738600-101763600	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr7:101738800-101754400	Weak transcription	Brain Germinal Matrix	brain
36	chr7:101738800-101763800	Strong transcription	Primary neutrophils fromperipheralblood	blood
37	chr7:101738800-101764200	Strong transcription	Fetal Thymus	thymus
38	chr7:101739000-101760600	Weak transcription	NHLF	lung
39	chr7:101739200-101760600	Weak transcription	HSMM	muscle
40	chr7:101739200-101763400	Strong transcription	Primary monocytes fromperipheralblood	blood
41	chr7:101739400-101742200	Enhancers	Placenta	Placenta
42	chr7:101739400-101745800	Weak transcription	Brain Substantia Nigra	brain
43	chr7:101739400-101751800	Strong transcription	Primary T cells from cord blood	blood
44	chr7:101739600-101743800	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr7:101739600-101752000	Strong transcription	Thymus	Thymus
46	chr7:101739800-101747600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr7:101740200-101747600	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr7:101740200-101748000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr7:101740200-101753200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr7:101740400-101743600	Strong transcription	Left Ventricle	heart

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