Variant report

Variant	rs2014667
Chromosome Location	chr1:225112465-225112466
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs1080260	0.91[EUR][1000 genomes]
rs1110378	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1110379	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12563434	0.99[ASN][1000 genomes]
rs1506069	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1506071	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1506072	0.87[EUR][1000 genomes]
rs1506074	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1832540	0.81[EUR][1000 genomes]
rs1936631	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2014656	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2051158	0.91[ASN][1000 genomes]
rs2128268	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2244102	0.90[ASN][1000 genomes]
rs2244126	0.90[ASN][1000 genomes]
rs2254158	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2254406	0.99[ASN][1000 genomes]
rs2406097	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2449256	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2449258	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2449269	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2449281	0.87[EUR][1000 genomes]
rs2449287	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2449304	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2449315	0.89[EUR][1000 genomes]
rs2449320	0.91[EUR][1000 genomes]
rs2449322	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2456336	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2456349	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2489298	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2489301	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2489303	0.91[EUR][1000 genomes]
rs2489311	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2489313	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2489314	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2489324	0.89[EUR][1000 genomes]
rs2489327	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2489337	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2489343	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2489346	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2489348	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2489352	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2489353	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2489355	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2501078	0.83[EUR][1000 genomes]
rs2501082	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2501083	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2501085	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2501087	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2501099	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2501100	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2501101	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2501110	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2501120	0.89[EUR][1000 genomes]
rs2501133	0.84[ASN][1000 genomes]
rs2501147	0.91[EUR][1000 genomes]
rs2501151	0.91[EUR][1000 genomes]
rs2929626	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2939363	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3102106	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3120991	0.81[EUR][1000 genomes]
rs3128657	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3128664	0.81[EUR][1000 genomes]
rs61849768	0.83[ASN][1000 genomes]
rs6686694	0.80[EUR][1000 genomes]
rs7530659	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs995613	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757773	chr1:225087924-225253274	Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	esv2759001	chr1:225087924-225253274	Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225110200-225117000	Weak transcription	Gastric	stomach
2	chr1:225110400-225112800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:225110400-225117000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:225110400-225117000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr1:225110400-225117000	Weak transcription	Pancreas	Pancrea
6	chr1:225110800-225116200	Weak transcription	Liver	Liver
7	chr1:225111600-225117000	Weak transcription	NH-A	brain
8	chr1:225112400-225117000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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