Variant report

Variant	rs201471
Chromosome Location	chr7:101744145-101744146
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:5)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:5 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HDAC2	chr7:101744134-101744798	MCF-7	breast:	n/a	n/a
2	GATA3	chr7:101744090-101744999	MCF-7	breast:	n/a	n/a
3	MAX	chr7:101744060-101744871	MCF-7	breast:	n/a	n/a
4	NR2F2	chr7:101744105-101745007	MCF-7	breast:	n/a	n/a
5	MYC	chr7:101744129-101744746	MCF10A-Er-Src	breast:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:101722804..101725007-chr7:101742245..101744915,2	K562	blood:
2	chr7:101738827..101741081-chr7:101742643..101744286,2	MCF-7	breast:
3	chr7:101743613..101746521-chr7:101753167..101754806,2	K562	blood:
4	chr7:101743000..101745904-chr7:101750491..101753386,3	MCF-7	breast:

No data

Variant related genes	Relation type
CUX1	TF binding region

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10953358	0.97[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1637257	0.96[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs169307	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1734879	0.96[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1902	0.89[ASN][1000 genomes]
rs201435	0.95[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs201436	0.96[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs201438	0.97[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs201440	0.97[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs201441	0.97[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201442	0.97[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201443	0.97[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201445	0.97[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201446	0.97[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs201447	0.97[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201448	0.97[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201449	0.97[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201450	0.97[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201451	0.97[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201452	0.97[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201453	0.97[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201454	0.97[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201455	0.97[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201456	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201457	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201458	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201459	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201461	0.97[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201464	0.83[EUR][1000 genomes]
rs201468	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs201469	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201470	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201472	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs201475	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs201477	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs201478	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs201480	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs201481	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs201482	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs201485	0.84[AFR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs201486	0.88[AFR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs201489	0.96[AFR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs201490	0.96[AFR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs201492	0.89[AFR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs201493	0.96[AFR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs201497	0.86[AFR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs201498	0.87[AFR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs201500	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs201502	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs201503	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs201504	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs201505	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs201507	0.92[AFR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs201508	0.85[AFR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs201509	0.92[AFR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs201511	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs201514	0.89[ASN][1000 genomes]
rs201515	0.89[ASN][1000 genomes]
rs201516	0.89[ASN][1000 genomes]
rs201517	0.89[ASN][1000 genomes]
rs201518	0.89[ASN][1000 genomes]
rs201519	0.89[ASN][1000 genomes]
rs201520	0.89[ASN][1000 genomes]
rs201521	0.89[ASN][1000 genomes]
rs201522	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs201523	0.87[ASN][1000 genomes]
rs201526	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs201527	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs201529	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs201530	0.84[ASN][1000 genomes]
rs2529095	0.90[AFR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2529373	0.91[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs2734782	0.93[AFR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34247954	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs367333	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs380175	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs382228	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs411354	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs417013	0.83[EUR][1000 genomes]
rs436287	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs443963	0.82[AMR][1000 genomes]
rs4729776	0.82[EUR][1000 genomes]
rs6465851	0.82[EUR][1000 genomes]
rs6950791	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6970800	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101708200-101765000	Weak transcription	Small Intestine	intestine
2	chr7:101715200-101749800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr7:101715400-101749600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr7:101715600-101745200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr7:101715600-101745200	Weak transcription	HSMMtube	muscle
6	chr7:101716000-101746600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr7:101716400-101758600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr7:101726200-101747800	Weak transcription	Osteobl	bone
9	chr7:101733000-101744200	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr7:101733200-101749600	Weak transcription	Esophagus	oesophagus
11	chr7:101733200-101758600	Weak transcription	Psoas Muscle	Psoas
12	chr7:101735800-101744200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr7:101737200-101745800	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr7:101737400-101746200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr7:101737400-101747600	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr7:101737400-101754400	Weak transcription	Brain Angular Gyrus	brain
17	chr7:101738000-101749800	Weak transcription	Fetal Heart	heart
18	chr7:101738200-101747200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr7:101738200-101751800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr7:101738200-101754400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr7:101738400-101745800	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr7:101738400-101760800	Weak transcription	NHDF-Ad	bronchial
23	chr7:101738600-101758400	Weak transcription	Colon Smooth Muscle	Colon
24	chr7:101738600-101763600	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr7:101738800-101754400	Weak transcription	Brain Germinal Matrix	brain
26	chr7:101738800-101763800	Strong transcription	Primary neutrophils fromperipheralblood	blood
27	chr7:101738800-101764200	Strong transcription	Fetal Thymus	thymus
28	chr7:101739000-101760600	Weak transcription	NHLF	lung
29	chr7:101739200-101760600	Weak transcription	HSMM	muscle
30	chr7:101739200-101763400	Strong transcription	Primary monocytes fromperipheralblood	blood
31	chr7:101739400-101745800	Weak transcription	Brain Substantia Nigra	brain
32	chr7:101739400-101751800	Strong transcription	Primary T cells from cord blood	blood
33	chr7:101739600-101752000	Strong transcription	Thymus	Thymus
34	chr7:101739800-101747600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr7:101740200-101747600	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr7:101740200-101748000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr7:101740200-101753200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr7:101740400-101746200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
39	chr7:101740400-101751800	Strong transcription	Spleen	Spleen
40	chr7:101740400-101763400	Strong transcription	Dnd41	blood
41	chr7:101740400-101764000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr7:101740600-101746000	Weak transcription	Brain Anterior Caudate	brain
43	chr7:101740600-101746600	Strong transcription	Skeletal Muscle Male	skeletal muscle
44	chr7:101740600-101746800	Strong transcription	Fetal Muscle Trunk	muscle
45	chr7:101740800-101744200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr7:101740800-101744200	Weak transcription	Brain Hippocampus Middle	brain
47	chr7:101740800-101752000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr7:101741000-101751600	Strong transcription	Fetal Stomach	stomach
49	chr7:101741000-101751800	Strong transcription	Adipose Nuclei	Adipose
50	chr7:101741000-101757200	Weak transcription	NH-A	brain

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