Variant report

Variant	rs201477
Chromosome Location	chr7:101746915-101746916
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10953358	0.88[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1637257	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs169307	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1734879	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1902	0.93[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs201435	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs201436	1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs201438	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs201440	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs201441	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201442	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201443	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201445	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201446	0.88[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs201447	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201448	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201449	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201450	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201451	0.88[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201452	0.88[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201453	0.88[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201454	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201455	1.00[CEU][hapmap];0.94[YRI][hapmap];0.88[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201456	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201457	0.90[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201458	0.83[CEU][hapmap];0.85[YRI][hapmap];0.90[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201459	1.00[CEU][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201461	0.88[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201464	0.83[EUR][1000 genomes]
rs201468	1.00[CEU][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs201469	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs201470	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs201471	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs201472	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs201475	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs201478	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs201480	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs201481	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs201482	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs201485	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs201486	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs201489	0.86[AFR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs201490	1.00[CEU][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs201491	0.85[CEU][hapmap]
rs201492	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs201493	0.96[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs201497	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs201498	1.00[CEU][hapmap];0.82[JPT][hapmap];0.94[YRI][hapmap];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs201500	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs201502	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs201503	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs201504	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs201505	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs201507	0.83[AFR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs201508	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs201509	1.00[CEU][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs201511	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs201514	0.93[ASN][1000 genomes]
rs201515	0.93[ASN][1000 genomes]
rs201516	0.93[ASN][1000 genomes]
rs201517	0.93[ASN][1000 genomes]
rs201518	0.93[ASN][1000 genomes]
rs201519	0.93[ASN][1000 genomes]
rs201520	0.93[ASN][1000 genomes]
rs201521	0.93[ASN][1000 genomes]
rs201522	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs201523	0.91[ASN][1000 genomes]
rs201526	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs201527	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs201529	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs201530	0.88[ASN][1000 genomes]
rs2529095	0.81[AFR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2529373	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs2734782	0.83[AFR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34247954	0.90[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs367333	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs380175	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs382228	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs411354	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs417013	0.80[CEU][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs436287	0.92[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs443963	0.86[AMR][1000 genomes]
rs4729776	0.82[EUR][1000 genomes]
rs6465851	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6950791	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6970800	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101708200-101765000	Weak transcription	Small Intestine	intestine
2	chr7:101715200-101749800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr7:101715400-101749600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr7:101716400-101758600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr7:101726200-101747800	Weak transcription	Osteobl	bone
6	chr7:101733200-101749600	Weak transcription	Esophagus	oesophagus
7	chr7:101733200-101758600	Weak transcription	Psoas Muscle	Psoas
8	chr7:101737400-101747600	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr7:101737400-101754400	Weak transcription	Brain Angular Gyrus	brain
10	chr7:101738000-101749800	Weak transcription	Fetal Heart	heart
11	chr7:101738200-101747200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr7:101738200-101751800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr7:101738200-101754400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr7:101738400-101760800	Weak transcription	NHDF-Ad	bronchial
15	chr7:101738600-101758400	Weak transcription	Colon Smooth Muscle	Colon
16	chr7:101738600-101763600	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr7:101738800-101754400	Weak transcription	Brain Germinal Matrix	brain
18	chr7:101738800-101763800	Strong transcription	Primary neutrophils fromperipheralblood	blood
19	chr7:101738800-101764200	Strong transcription	Fetal Thymus	thymus
20	chr7:101739000-101760600	Weak transcription	NHLF	lung
21	chr7:101739200-101760600	Weak transcription	HSMM	muscle
22	chr7:101739200-101763400	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr7:101739400-101751800	Strong transcription	Primary T cells from cord blood	blood
24	chr7:101739600-101752000	Strong transcription	Thymus	Thymus
25	chr7:101739800-101747600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr7:101740200-101747600	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr7:101740200-101748000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr7:101740200-101753200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr7:101740400-101751800	Strong transcription	Spleen	Spleen
30	chr7:101740400-101763400	Strong transcription	Dnd41	blood
31	chr7:101740400-101764000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr7:101740800-101752000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr7:101741000-101751600	Strong transcription	Fetal Stomach	stomach
34	chr7:101741000-101751800	Strong transcription	Adipose Nuclei	Adipose
35	chr7:101741000-101757200	Weak transcription	NH-A	brain
36	chr7:101741000-101765000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr7:101741200-101747000	Strong transcription	Lung	lung
38	chr7:101741200-101748200	Weak transcription	Brain Cingulate Gyrus	brain
39	chr7:101741200-101751400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr7:101741200-101753000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr7:101741400-101748200	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr7:101741400-101751800	Strong transcription	Liver	Liver
43	chr7:101741400-101754000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr7:101741600-101747400	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr7:101741600-101750000	Weak transcription	Fetal Brain Female	brain
46	chr7:101741600-101764800	Weak transcription	Stomach Mucosa	stomach
47	chr7:101741800-101751400	Strong transcription	Duodenum Mucosa	Duodenum
48	chr7:101742000-101747600	Weak transcription	Right Ventricle	heart
49	chr7:101742400-101751600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr7:101742400-101752200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

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