Variant report

Variant	rs201481403
Chromosome Location	chr4:88046275-88046276
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999176	chr4:87869996-88098136	Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv998335	chr4:87869996-88104414	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1001017	chr4:87872160-88087003	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv537166	chr4:87872160-88087003	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv997750	chr4:87933945-88264127	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv1007020	chr4:88046263-88235018	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
7	nsv537169	chr4:88046263-88235018	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:88019000-88072200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:88026400-88063600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
3	chr4:88026600-88055600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr4:88030000-88048800	Weak transcription	A549	lung
5	chr4:88030600-88057600	Weak transcription	Brain Germinal Matrix	brain
6	chr4:88032800-88059000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr4:88033600-88047600	Weak transcription	HSMM	muscle
8	chr4:88035600-88056800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr4:88035600-88063800	Strong transcription	Primary T cells from cord blood	blood
10	chr4:88036400-88063600	Weak transcription	Fetal Brain Male	brain
11	chr4:88036800-88046600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr4:88036800-88046800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr4:88036800-88059200	Weak transcription	Fetal Brain Female	brain
14	chr4:88038400-88046600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr4:88038800-88046800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr4:88038800-88047000	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr4:88039600-88046800	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr4:88040000-88047200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr4:88040000-88052000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr4:88041200-88048800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr4:88041800-88046600	Weak transcription	Thymus	Thymus
22	chr4:88042200-88046600	Weak transcription	Fetal Muscle Trunk	muscle
23	chr4:88042200-88046800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr4:88042400-88049000	Strong transcription	HepG2	liver
25	chr4:88042600-88046800	Weak transcription	Pancreas	Pancrea
26	chr4:88042800-88046600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr4:88042800-88046600	Weak transcription	Esophagus	oesophagus
28	chr4:88042800-88046600	Weak transcription	Gastric	stomach
29	chr4:88042800-88046600	Weak transcription	Small Intestine	intestine
30	chr4:88042800-88046800	Weak transcription	Colonic Mucosa	Colon
31	chr4:88042800-88069400	Strong transcription	Placenta	Placenta
32	chr4:88043000-88046600	Weak transcription	Lung	lung
33	chr4:88043000-88046600	Weak transcription	Spleen	Spleen
34	chr4:88043000-88061400	Strong transcription	Rectal Mucosa Donor 29	rectum
35	chr4:88043200-88047800	Weak transcription	NH-A	brain
36	chr4:88043400-88048600	Weak transcription	Stomach Mucosa	stomach
37	chr4:88043400-88064800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr4:88043600-88046400	Weak transcription	Brain Cingulate Gyrus	brain
39	chr4:88043600-88046600	Weak transcription	Brain Anterior Caudate	brain
40	chr4:88043600-88046800	Weak transcription	Aorta	Aorta
41	chr4:88043600-88046800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr4:88043600-88047200	Weak transcription	Osteobl	bone
43	chr4:88043600-88049000	Weak transcription	Right Atrium	heart
44	chr4:88043600-88064600	Strong transcription	GM12878-XiMat	blood
45	chr4:88043800-88046400	Weak transcription	Brain Hippocampus Middle	brain
46	chr4:88043800-88046600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr4:88043800-88046600	Weak transcription	Fetal Muscle Leg	muscle
48	chr4:88043800-88046600	Weak transcription	NHLF	lung
49	chr4:88043800-88046800	Weak transcription	HSMMtube	muscle
50	chr4:88043800-88048600	Weak transcription	Brain Angular Gyrus	brain

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