Variant report

Variant	rs201490
Chromosome Location	chr7:101751910-101751911
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:101751781..101754172-chr7:101754915..101757443,3	K562	blood:
2	chr7:101743000..101745904-chr7:101750491..101753386,3	MCF-7	breast:
3	chr7:101528909..101531849-chr7:101750472..101753335,2	MCF-7	breast:
4	chr7:101750174..101752754-chr7:101753399..101756546,3	MCF-7	breast:

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10953358	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1637257	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs169307	1.00[CEU][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs1734879	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1902	0.93[CEU][hapmap];0.82[JPT][hapmap]
rs201435	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs201436	1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs201438	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs201440	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs201441	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs201442	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs201443	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs201445	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs201446	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs201447	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs201448	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs201449	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs201450	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs201451	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs201452	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs201453	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs201454	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs201455	1.00[CEU][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs201456	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs201457	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs201458	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs201459	1.00[CEU][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs201461	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs201464	0.81[EUR][1000 genomes]
rs201466	0.83[AMR][1000 genomes]
rs201468	1.00[CEU][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs201469	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs201470	0.96[AFR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs201471	0.96[AFR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs201472	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs201475	1.00[CEU][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs201477	1.00[CEU][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs201478	0.96[AFR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs201480	0.96[AFR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs201481	0.91[AFR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs201482	0.91[AFR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs201485	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201486	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201489	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201491	0.86[CEU][hapmap]
rs201492	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201493	0.96[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs201497	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs201498	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201500	0.95[AFR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs201502	1.00[CEU][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs201503	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs201504	0.88[AFR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs201505	0.97[AFR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs201507	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201508	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201509	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201511	0.91[AFR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs201522	1.00[CEU][hapmap];0.82[JPT][hapmap];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs201526	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs201527	0.92[CEU][hapmap];0.82[JPT][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs201529	0.86[AFR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2529095	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2529373	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2734782	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34247954	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs367333	0.82[EUR][1000 genomes]
rs380175	0.93[EUR][1000 genomes]
rs382228	0.95[EUR][1000 genomes]
rs411354	0.86[EUR][1000 genomes]
rs417013	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs436287	0.92[CEU][hapmap];0.82[JPT][hapmap];0.93[EUR][1000 genomes]
rs443963	0.81[EUR][1000 genomes]
rs4729776	0.82[EUR][1000 genomes]
rs6465851	0.82[EUR][1000 genomes]
rs6950791	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs6970800	0.94[EUR][1000 genomes]

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101708200-101765000	Weak transcription	Small Intestine	intestine
2	chr7:101716400-101758600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr7:101733200-101758600	Weak transcription	Psoas Muscle	Psoas
4	chr7:101737400-101754400	Weak transcription	Brain Angular Gyrus	brain
5	chr7:101738200-101754400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr7:101738400-101760800	Weak transcription	NHDF-Ad	bronchial
7	chr7:101738600-101758400	Weak transcription	Colon Smooth Muscle	Colon
8	chr7:101738600-101763600	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr7:101738800-101754400	Weak transcription	Brain Germinal Matrix	brain
10	chr7:101738800-101763800	Strong transcription	Primary neutrophils fromperipheralblood	blood
11	chr7:101738800-101764200	Strong transcription	Fetal Thymus	thymus
12	chr7:101739000-101760600	Weak transcription	NHLF	lung
13	chr7:101739200-101760600	Weak transcription	HSMM	muscle
14	chr7:101739200-101763400	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr7:101739600-101752000	Strong transcription	Thymus	Thymus
16	chr7:101740200-101753200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr7:101740400-101763400	Strong transcription	Dnd41	blood
18	chr7:101740400-101764000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr7:101740800-101752000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr7:101741000-101757200	Weak transcription	NH-A	brain
21	chr7:101741000-101765000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr7:101741200-101753000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr7:101741400-101754000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr7:101741600-101764800	Weak transcription	Stomach Mucosa	stomach
25	chr7:101742400-101752200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr7:101743200-101753200	Strong transcription	Fetal Intestine Small	intestine
27	chr7:101743600-101752000	Strong transcription	Sigmoid Colon	Sigmoid Colon
28	chr7:101743600-101754400	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr7:101744400-101754800	Strong transcription	Fetal Intestine Large	intestine
30	chr7:101744600-101765000	Weak transcription	HUVEC	blood vessel
31	chr7:101744800-101754000	Weak transcription	Brain Hippocampus Middle	brain
32	chr7:101745000-101758600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr7:101745200-101754600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr7:101745600-101754600	Weak transcription	HSMMtube	muscle
35	chr7:101745600-101758600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr7:101745800-101752200	Strong transcription	HUES6 Cell Line	embryonic stem cell
37	chr7:101746000-101765000	Weak transcription	HMEC	breast
38	chr7:101746400-101752800	Weak transcription	Hela-S3	cervix
39	chr7:101746600-101758600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr7:101746600-101764200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
41	chr7:101746800-101754600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr7:101746800-101758000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr7:101746800-101759200	Weak transcription	Colonic Mucosa	Colon
44	chr7:101747000-101754600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr7:101747800-101754200	Weak transcription	Brain Anterior Caudate	brain
46	chr7:101747800-101762800	Weak transcription	Fetal Kidney	kidney
47	chr7:101748000-101754200	Weak transcription	Brain Substantia Nigra	brain
48	chr7:101748600-101754000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr7:101748600-101754400	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr7:101748600-101754800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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