Variant report

Variant	rs201492
Chromosome Location	chr7:101754138-101754139
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:101743613..101746521-chr7:101753167..101754806,2	K562	blood:
2	chr7:101751781..101754172-chr7:101754915..101757443,3	K562	blood:
3	chr7:101750174..101752754-chr7:101753399..101756546,3	MCF-7	breast:
4	chr7:101752221..101755453-chr7:101756751..101759873,4	K562	blood:

Extended variants
information (count: 77 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10953358	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1637257	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs169307	1.00[CEU][hapmap];0.82[JPT][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs1734879	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1902	0.92[CEU][hapmap];0.82[JPT][hapmap]
rs201435	1.00[CEU][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs201436	0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs201438	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs201440	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs201441	0.82[ASW][hapmap];1.00[CEU][hapmap];0.97[LWK][hapmap];0.96[MEX][hapmap];0.86[MKK][hapmap];0.93[TSI][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs201442	0.82[ASW][hapmap];1.00[CEU][hapmap];0.97[LWK][hapmap];0.96[MEX][hapmap];0.86[MKK][hapmap];0.93[TSI][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs201443	1.00[CEU][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs201445	1.00[CEU][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs201446	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs201447	1.00[CEU][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs201448	1.00[CEU][hapmap];0.93[LWK][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs201449	0.82[ASW][hapmap];1.00[CEU][hapmap];0.97[LWK][hapmap];0.96[MEX][hapmap];0.86[MKK][hapmap];0.93[TSI][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs201450	0.82[ASW][hapmap];1.00[CEU][hapmap];0.97[LWK][hapmap];0.96[MEX][hapmap];0.86[MKK][hapmap];0.93[TSI][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs201451	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs201452	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs201453	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs201454	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs201455	0.82[ASW][hapmap];1.00[CEU][hapmap];0.93[LWK][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];0.88[YRI][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs201456	1.00[CEU][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs201457	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs201458	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs201459	1.00[CEU][hapmap];0.88[YRI][hapmap];0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs201461	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs201464	0.81[EUR][1000 genomes]
rs201466	0.81[AMR][1000 genomes]
rs201468	1.00[CEU][hapmap];0.88[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs201469	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs201470	0.89[AFR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs201471	0.89[AFR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs201472	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs201475	1.00[CEU][hapmap];0.82[JPT][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs201477	1.00[CEU][hapmap];0.82[JPT][hapmap];0.94[YRI][hapmap];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs201478	0.89[AFR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs201480	0.89[AFR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs201481	0.96[AFR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs201482	0.96[AFR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs201485	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201486	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201489	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201490	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201491	0.85[CEU][hapmap]
rs201493	0.96[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs201497	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs201498	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201500	0.85[AFR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs201502	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.88[AFR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs201503	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.88[AFR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs201504	0.98[AFR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs201505	0.88[AFR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs201507	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201508	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201509	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201511	0.82[AFR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs201522	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.91[LWK][hapmap];0.91[MKK][hapmap];0.98[TSI][hapmap];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs201526	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs201527	0.91[CEU][hapmap];0.82[JPT][hapmap];0.83[YRI][hapmap];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs201529	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2529095	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2529373	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2734782	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34247954	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs367333	0.82[EUR][1000 genomes]
rs380175	0.93[EUR][1000 genomes]
rs382228	0.95[EUR][1000 genomes]
rs411354	0.86[EUR][1000 genomes]
rs417013	0.80[CEU][hapmap];0.90[LWK][hapmap];0.84[TSI][hapmap];0.83[EUR][1000 genomes]
rs436287	0.92[CEU][hapmap];0.82[JPT][hapmap];0.93[EUR][1000 genomes]
rs443963	0.81[EUR][1000 genomes]
rs4729776	0.82[EUR][1000 genomes]
rs6465851	0.82[EUR][1000 genomes]
rs6950791	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs6970800	0.94[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs201492	CUX1	cis	cerebellum	SCAN
rs201492	EPHB4	cis	parietal	SCAN
rs201492	ZCWPW1	cis	cerebellum	SCAN

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101708200-101765000	Weak transcription	Small Intestine	intestine
2	chr7:101716400-101758600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr7:101733200-101758600	Weak transcription	Psoas Muscle	Psoas
4	chr7:101737400-101754400	Weak transcription	Brain Angular Gyrus	brain
5	chr7:101738200-101754400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr7:101738400-101760800	Weak transcription	NHDF-Ad	bronchial
7	chr7:101738600-101758400	Weak transcription	Colon Smooth Muscle	Colon
8	chr7:101738600-101763600	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr7:101738800-101754400	Weak transcription	Brain Germinal Matrix	brain
10	chr7:101738800-101763800	Strong transcription	Primary neutrophils fromperipheralblood	blood
11	chr7:101738800-101764200	Strong transcription	Fetal Thymus	thymus
12	chr7:101739000-101760600	Weak transcription	NHLF	lung
13	chr7:101739200-101760600	Weak transcription	HSMM	muscle
14	chr7:101739200-101763400	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr7:101740400-101763400	Strong transcription	Dnd41	blood
16	chr7:101740400-101764000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr7:101741000-101757200	Weak transcription	NH-A	brain
18	chr7:101741000-101765000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr7:101741600-101764800	Weak transcription	Stomach Mucosa	stomach
20	chr7:101743600-101754400	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr7:101744400-101754800	Strong transcription	Fetal Intestine Large	intestine
22	chr7:101744600-101765000	Weak transcription	HUVEC	blood vessel
23	chr7:101745000-101758600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr7:101745200-101754600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr7:101745600-101754600	Weak transcription	HSMMtube	muscle
26	chr7:101745600-101758600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr7:101746000-101765000	Weak transcription	HMEC	breast
28	chr7:101746600-101758600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr7:101746600-101764200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
30	chr7:101746800-101754600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr7:101746800-101758000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr7:101746800-101759200	Weak transcription	Colonic Mucosa	Colon
33	chr7:101747000-101754600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr7:101747800-101754200	Weak transcription	Brain Anterior Caudate	brain
35	chr7:101747800-101762800	Weak transcription	Fetal Kidney	kidney
36	chr7:101748000-101754200	Weak transcription	Brain Substantia Nigra	brain
37	chr7:101748600-101754400	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr7:101748600-101754800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr7:101748600-101756600	Weak transcription	Aorta	Aorta
40	chr7:101748600-101756800	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr7:101748600-101757800	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr7:101748600-101758200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr7:101748600-101758600	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr7:101748600-101765000	Weak transcription	NHEK	skin
45	chr7:101748800-101757200	Weak transcription	A549	lung
46	chr7:101748800-101758600	Weak transcription	K562	blood
47	chr7:101750000-101760400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr7:101750200-101754200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr7:101750200-101754600	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr7:101750200-101754600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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