Variant report

Variant	rs201501
Chromosome Location	chr7:101758584-101758585
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:101757440..101759517-chr7:101762519..101765304,2	K562	blood:
2	chr7:101752221..101755453-chr7:101756751..101759873,4	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs169307	0.85[CEU][hapmap]
rs1902	0.92[CEU][hapmap]
rs201435	0.85[CEU][hapmap]
rs201441	0.85[CEU][hapmap]
rs201442	0.85[CEU][hapmap]
rs201443	0.85[CEU][hapmap]
rs201445	0.85[CEU][hapmap]
rs201447	0.84[CEU][hapmap]
rs201448	0.85[CEU][hapmap]
rs201449	0.85[CEU][hapmap]
rs201450	0.85[CEU][hapmap]
rs201454	0.85[CEU][hapmap]
rs201455	0.85[CEU][hapmap]
rs201456	0.85[CEU][hapmap]
rs201459	0.83[CEU][hapmap]
rs201468	0.89[CEU][hapmap]
rs201469	0.85[CEU][hapmap]
rs201475	0.85[CEU][hapmap]
rs201477	0.85[CEU][hapmap]
rs201483	0.94[AFR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs201490	0.85[CEU][hapmap]
rs201491	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201493	0.81[CEU][hapmap]
rs201498	0.85[CEU][hapmap]
rs201502	0.85[CEU][hapmap]
rs201503	0.85[CEU][hapmap]
rs201509	0.85[CEU][hapmap]
rs201522	0.85[CEU][hapmap]
rs3764839	1.00[JPT][hapmap]
rs6950791	0.85[CEU][hapmap]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs201501	ZCWPW1	cis	cerebellum	SCAN
rs201501	ATXN7L1	cis	parietal	SCAN
rs201501	CUX1	cis	cerebellum	SCAN

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101708200-101765000	Weak transcription	Small Intestine	intestine
2	chr7:101716400-101758600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr7:101733200-101758600	Weak transcription	Psoas Muscle	Psoas
4	chr7:101738400-101760800	Weak transcription	NHDF-Ad	bronchial
5	chr7:101738600-101763600	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr7:101738800-101763800	Strong transcription	Primary neutrophils fromperipheralblood	blood
7	chr7:101738800-101764200	Strong transcription	Fetal Thymus	thymus
8	chr7:101739000-101760600	Weak transcription	NHLF	lung
9	chr7:101739200-101760600	Weak transcription	HSMM	muscle
10	chr7:101739200-101763400	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr7:101740400-101763400	Strong transcription	Dnd41	blood
12	chr7:101740400-101764000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr7:101741000-101765000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr7:101741600-101764800	Weak transcription	Stomach Mucosa	stomach
15	chr7:101744600-101765000	Weak transcription	HUVEC	blood vessel
16	chr7:101745000-101758600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr7:101745600-101758600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr7:101746000-101765000	Weak transcription	HMEC	breast
19	chr7:101746600-101758600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr7:101746600-101764200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr7:101746800-101759200	Weak transcription	Colonic Mucosa	Colon
22	chr7:101747800-101762800	Weak transcription	Fetal Kidney	kidney
23	chr7:101748600-101758600	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr7:101748600-101765000	Weak transcription	NHEK	skin
25	chr7:101748800-101758600	Weak transcription	K562	blood
26	chr7:101750000-101760400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr7:101750200-101771000	Weak transcription	Fetal Heart	heart
28	chr7:101750400-101758600	Weak transcription	Rectal Smooth Muscle	rectum
29	chr7:101751000-101759000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr7:101751400-101758600	Weak transcription	Ovary	ovary
31	chr7:101751400-101758600	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr7:101751600-101764800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr7:101753000-101760600	Strong transcription	Placenta	Placenta
34	chr7:101753400-101760400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr7:101753400-101763600	Strong transcription	Duodenum Mucosa	Duodenum
36	chr7:101753600-101758800	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr7:101753600-101761200	Strong transcription	Liver	Liver
38	chr7:101754400-101764200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr7:101754600-101758800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr7:101754600-101760200	Strong transcription	Pancreas	Pancrea
41	chr7:101754600-101760600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr7:101754600-101765000	Strong transcription	Fetal Intestine Small	intestine
43	chr7:101754800-101762800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr7:101754800-101764200	Strong transcription	Thymus	Thymus
45	chr7:101755200-101758600	Weak transcription	Brain Anterior Caudate	brain
46	chr7:101755200-101758600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr7:101755200-101758600	Weak transcription	Brain Substantia Nigra	brain
48	chr7:101755200-101758800	Weak transcription	Brain Angular Gyrus	brain
49	chr7:101755200-101760400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr7:101755200-101762600	Strong transcription	HUES6 Cell Line	embryonic stem cell

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