Variant report

Variant	rs201502
Chromosome Location	chr7:101759561-101759562
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:101752221..101755453-chr7:101756751..101759873,4	K562	blood:

Extended variants
information (count: 86 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10953358	0.91[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs1637257	0.95[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs169307	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1734879	0.95[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs1902	0.92[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs201435	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs201436	1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs201438	0.91[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs201440	0.91[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs201441	0.80[ASW][hapmap];1.00[CEU][hapmap];0.97[LWK][hapmap];0.92[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs201442	0.80[ASW][hapmap];1.00[CEU][hapmap];0.97[LWK][hapmap];0.92[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs201443	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs201445	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs201446	0.91[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs201447	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs201448	0.89[ASW][hapmap];1.00[CEU][hapmap];0.93[LWK][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs201449	0.80[ASW][hapmap];1.00[CEU][hapmap];0.97[LWK][hapmap];0.92[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs201450	0.80[ASW][hapmap];1.00[CEU][hapmap];0.97[LWK][hapmap];0.92[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs201451	0.91[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs201452	0.91[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs201453	0.91[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs201454	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs201455	0.80[ASW][hapmap];1.00[CEU][hapmap];0.93[LWK][hapmap];0.81[MKK][hapmap];0.93[TSI][hapmap];0.94[YRI][hapmap];0.91[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs201456	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs201457	0.94[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs201458	0.94[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs201459	1.00[CEU][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs201461	0.91[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs201464	0.80[EUR][1000 genomes]
rs201468	1.00[CEU][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs201469	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs201470	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs201471	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs201472	0.91[AFR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs201475	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs201477	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs201478	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201480	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201481	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201482	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201485	0.83[AFR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs201486	0.85[AFR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs201489	0.97[AFR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs201490	1.00[CEU][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs201491	0.85[CEU][hapmap]
rs201492	0.88[AFR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs201493	0.96[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs201497	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs201498	1.00[CEU][hapmap];0.82[JPT][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs201500	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201503	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201504	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201505	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201507	0.99[AFR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs201508	0.91[AFR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs201509	1.00[CEU][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs201511	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs201514	0.91[ASN][1000 genomes]
rs201515	0.91[ASN][1000 genomes]
rs201516	0.91[ASN][1000 genomes]
rs201517	0.91[ASN][1000 genomes]
rs201518	0.91[ASN][1000 genomes]
rs201519	0.91[ASN][1000 genomes]
rs201520	0.91[ASN][1000 genomes]
rs201521	0.91[ASN][1000 genomes]
rs201522	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201523	0.90[ASN][1000 genomes]
rs201526	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs201527	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs201529	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs201530	0.86[ASN][1000 genomes]
rs2529095	0.87[AFR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2529373	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2734782	0.89[AFR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34247954	0.94[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs367333	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs380175	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs382228	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs411354	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs417013	0.81[CEU][hapmap];0.85[JPT][hapmap];0.90[LWK][hapmap];0.91[MEX][hapmap];0.82[MKK][hapmap];0.84[TSI][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs436287	0.92[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs443963	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4729776	0.83[EUR][1000 genomes]
rs6465851	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6950791	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6970800	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs201502	EPHB4	cis	parietal	SCAN
rs201502	ZCWPW1	cis	cerebellum	SCAN
rs201502	CUX1	cis	cerebellum	SCAN

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101708200-101765000	Weak transcription	Small Intestine	intestine
2	chr7:101738400-101760800	Weak transcription	NHDF-Ad	bronchial
3	chr7:101738600-101763600	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr7:101738800-101763800	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr7:101738800-101764200	Strong transcription	Fetal Thymus	thymus
6	chr7:101739000-101760600	Weak transcription	NHLF	lung
7	chr7:101739200-101760600	Weak transcription	HSMM	muscle
8	chr7:101739200-101763400	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr7:101740400-101763400	Strong transcription	Dnd41	blood
10	chr7:101740400-101764000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr7:101741000-101765000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr7:101741600-101764800	Weak transcription	Stomach Mucosa	stomach
13	chr7:101744600-101765000	Weak transcription	HUVEC	blood vessel
14	chr7:101746000-101765000	Weak transcription	HMEC	breast
15	chr7:101746600-101764200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
16	chr7:101747800-101762800	Weak transcription	Fetal Kidney	kidney
17	chr7:101748600-101765000	Weak transcription	NHEK	skin
18	chr7:101750000-101760400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr7:101750200-101771000	Weak transcription	Fetal Heart	heart
20	chr7:101751600-101764800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr7:101753000-101760600	Strong transcription	Placenta	Placenta
22	chr7:101753400-101760400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr7:101753400-101763600	Strong transcription	Duodenum Mucosa	Duodenum
24	chr7:101753600-101761200	Strong transcription	Liver	Liver
25	chr7:101754400-101764200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr7:101754600-101760200	Strong transcription	Pancreas	Pancrea
27	chr7:101754600-101760600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr7:101754600-101765000	Strong transcription	Fetal Intestine Small	intestine
29	chr7:101754800-101762800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr7:101754800-101764200	Strong transcription	Thymus	Thymus
31	chr7:101755200-101760400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr7:101755200-101762600	Strong transcription	HUES6 Cell Line	embryonic stem cell
33	chr7:101755200-101765000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr7:101755200-101787000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr7:101755400-101760200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr7:101755400-101762400	Strong transcription	Fetal Stomach	stomach
37	chr7:101755400-101765000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr7:101755400-101773200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr7:101756000-101759800	Strong transcription	HUES64 Cell Line	embryonic stem cell
40	chr7:101756000-101760400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
41	chr7:101756000-101761400	Strong transcription	HUES48 Cell Line	embryonic stem cell
42	chr7:101756200-101760200	Strong transcription	Primary B cells from peripheral blood	blood
43	chr7:101756200-101763600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr7:101756200-101764000	Strong transcription	Fetal Intestine Large	intestine
45	chr7:101756400-101759600	Strong transcription	Cortex derived primary cultured neurospheres	brain
46	chr7:101756400-101760200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr7:101756400-101760400	Strong transcription	Skeletal Muscle Female	skeletal muscle
48	chr7:101756400-101760600	Strong transcription	Rectal Mucosa Donor 29	rectum
49	chr7:101756400-101760600	Strong transcription	Sigmoid Colon	Sigmoid Colon
50	chr7:101756400-101761400	Strong transcription	Stomach Smooth Muscle	stomach

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