Variant report

Variant	rs201507
Chromosome Location	chr7:101764141-101764142
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:101458132..101460298-chr7:101762998..101764899,2	MCF-7	breast:
2	chr7:101757440..101759517-chr7:101762519..101765304,2	K562	blood:
3	chr7:101762618..101764920-chr7:101767329..101769276,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000257923	Chromatin interaction

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10953358	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1637257	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs169307	0.92[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs1734879	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs201435	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs201436	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs201438	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs201440	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs201441	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs201442	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs201443	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs201445	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs201446	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs201447	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs201448	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs201449	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs201450	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs201451	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs201452	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs201453	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs201454	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs201455	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs201456	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs201457	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs201458	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs201459	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs201461	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs201468	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs201469	0.90[AFR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs201470	0.92[AFR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs201471	0.92[AFR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs201472	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs201475	0.92[AFR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs201477	0.83[AFR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs201478	0.92[AFR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs201480	0.92[AFR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs201481	0.88[AFR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs201482	0.88[AFR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs201485	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201486	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201489	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201490	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201492	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201493	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs201497	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs201498	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201500	0.96[AFR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs201502	0.99[AFR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs201503	0.99[AFR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs201504	0.89[AFR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs201505	0.99[AFR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs201508	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201509	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201511	0.92[AFR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs201522	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs201526	0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs201527	0.88[AFR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs201529	0.87[AFR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2529095	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2529373	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2734782	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34247954	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs367333	0.84[EUR][1000 genomes]
rs380175	0.94[EUR][1000 genomes]
rs382228	0.96[EUR][1000 genomes]
rs411354	0.87[EUR][1000 genomes]
rs417013	0.85[EUR][1000 genomes]
rs436287	0.94[EUR][1000 genomes]
rs443963	0.83[EUR][1000 genomes]
rs4729776	0.83[EUR][1000 genomes]
rs6465851	0.84[EUR][1000 genomes]
rs6950791	0.96[EUR][1000 genomes]
rs6970800	0.96[EUR][1000 genomes]

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101708200-101765000	Weak transcription	Small Intestine	intestine
2	chr7:101738800-101764200	Strong transcription	Fetal Thymus	thymus
3	chr7:101741000-101765000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr7:101741600-101764800	Weak transcription	Stomach Mucosa	stomach
5	chr7:101744600-101765000	Weak transcription	HUVEC	blood vessel
6	chr7:101746000-101765000	Weak transcription	HMEC	breast
7	chr7:101746600-101764200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
8	chr7:101748600-101765000	Weak transcription	NHEK	skin
9	chr7:101750200-101771000	Weak transcription	Fetal Heart	heart
10	chr7:101751600-101764800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr7:101754400-101764200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr7:101754600-101765000	Strong transcription	Fetal Intestine Small	intestine
13	chr7:101754800-101764200	Strong transcription	Thymus	Thymus
14	chr7:101755200-101765000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr7:101755200-101787000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr7:101755400-101765000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr7:101755400-101773200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr7:101759200-101765000	Weak transcription	Psoas Muscle	Psoas
19	chr7:101759400-101764800	Weak transcription	Esophagus	oesophagus
20	chr7:101759400-101770200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr7:101759600-101764800	Weak transcription	Primary hematopoietic stem cells	blood
22	chr7:101759600-101765000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr7:101759800-101764800	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr7:101759800-101764800	Weak transcription	K562	blood
25	chr7:101759800-101765000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr7:101759800-101765000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr7:101759800-101765000	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr7:101759800-101768400	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr7:101760200-101764600	Weak transcription	Colonic Mucosa	Colon
30	chr7:101760200-101764800	Weak transcription	Pancreas	Pancrea
31	chr7:101760200-101765000	Weak transcription	Primary B cells from peripheral blood	blood
32	chr7:101760200-101765000	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr7:101760200-101765000	Weak transcription	Adipose Nuclei	Adipose
34	chr7:101760200-101769600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr7:101760200-101796000	Weak transcription	Rectal Smooth Muscle	rectum
36	chr7:101760400-101764800	Weak transcription	Hela-S3	cervix
37	chr7:101760400-101765000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr7:101760400-101765000	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr7:101760400-101765000	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr7:101760400-101765200	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr7:101760400-101768000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr7:101760400-101768400	Weak transcription	Aorta	Aorta
43	chr7:101760400-101788600	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr7:101760400-101789400	Weak transcription	Right Ventricle	heart
45	chr7:101760400-101795800	Weak transcription	Left Ventricle	heart
46	chr7:101760600-101765000	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr7:101760600-101765400	Enhancers	Fetal Muscle Trunk	muscle
48	chr7:101760800-101766400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr7:101761000-101764400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr7:101761000-101795600	Weak transcription	Colon Smooth Muscle	Colon

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