Variant report

Variant	rs2016178
Chromosome Location	chr16:80159559-80159560
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10514483	0.96[EUR][1000 genomes]
rs1110761	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12444051	0.95[EUR][1000 genomes]
rs1382387	0.80[CHB][hapmap]
rs1600192	0.83[ASN][1000 genomes]
rs1842021	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2009458	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2016205	0.97[EUR][1000 genomes]
rs4889105	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906995	chr16:80094975-80166677	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv833298	chr16:80122337-80314603	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1055982	chr16:80151604-80202923	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2016178	NUDT7	cis	parietal	SCAN
rs2016178	CHST6	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80151800-80159600	Weak transcription	Adipose Nuclei	Adipose
2	chr16:80157600-80159600	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr16:80158400-80162200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr16:80159000-80159800	Enhancers	Stomach Smooth Muscle	stomach
5	chr16:80159000-80160200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr16:80159000-80160200	Enhancers	HSMMtube	muscle
7	chr16:80159200-80159600	Enhancers	Osteobl	bone
8	chr16:80159200-80160000	Enhancers	Ovary	ovary
9	chr16:80159200-80160400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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