Variant report

Variant	rs2017091
Chromosome Location	chr15:79032744-79032745
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:78910807..78911530-chr15:79032496..79033228,4	K562	blood:
2	chr15:78910640..78911433-chr15:79032225..79033403,4	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11072799	0.87[EUR][1000 genomes]
rs11072800	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11629639	0.83[EUR][1000 genomes]
rs11632672	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11633152	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11852887	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11852909	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11856441	0.87[EUR][1000 genomes]
rs12148817	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12899201	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12901228	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12904489	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12906022	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12906165	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12906835	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12906847	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12906977	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12907207	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12907432	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12907536	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12910831	0.84[AMR][1000 genomes]
rs12912245	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12913779	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12917502	0.87[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1383634	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1383635	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1809412	0.84[EUR][1000 genomes]
rs1809414	0.87[EUR][1000 genomes]
rs1814880	0.83[EUR][1000 genomes]
rs1825086	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1904920	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2017297	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2219939	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2622821	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4887091	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4887092	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs71402966	0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs71402967	0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7176070	0.95[EUR][1000 genomes]
rs7182567	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7182694	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7182993	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs755998	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8030090	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8030335	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs899997	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	nsv974606	chr15:78996783-79048337	Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv904431	chr15:79006442-79155088	Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79029800-79032800	Weak transcription	Spleen	Spleen
2	chr15:79031200-79033000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr15:79031200-79033000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr15:79031400-79033000	Enhancers	NHEK	skin
5	chr15:79031600-79032800	Enhancers	Stomach Mucosa	stomach
6	chr15:79031600-79033000	Enhancers	A549	lung
7	chr15:79031800-79033000	Enhancers	Esophagus	oesophagus
8	chr15:79031800-79033800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr15:79032400-79032800	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr15:79032400-79032800	Enhancers	Duodenum Smooth Muscle	Duodenum
11	chr15:79032400-79032800	Enhancers	Stomach Smooth Muscle	stomach
12	chr15:79032400-79032800	Flanking Active TSS	Hela-S3	cervix
13	chr15:79032400-79033000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr15:79032400-79033000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr15:79032400-79033000	Enhancers	Duodenum Mucosa	Duodenum
16	chr15:79032600-79032800	Bivalent Enhancer	Adipose Nuclei	Adipose
17	chr15:79032600-79032800	Enhancers	Sigmoid Colon	Sigmoid Colon
18	chr15:79032600-79032800	Flanking Active TSS	HepG2	liver
19	chr15:79032600-79033000	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
20	chr15:79032600-79033000	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr15:79032600-79033000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
22	chr15:79032600-79033000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr15:79032600-79033000	Enhancers	Primary B cells from peripheral blood	blood
24	chr15:79032600-79033000	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr15:79032600-79033000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr15:79032600-79033000	Enhancers	Colonic Mucosa	Colon
27	chr15:79032600-79033000	Bivalent Enhancer	Fetal Stomach	stomach
28	chr15:79032600-79033000	Enhancers	Fetal Thymus	thymus
29	chr15:79032600-79033000	Enhancers	Pancreas	Pancrea
30	chr15:79032600-79033000	Enhancers	Psoas Muscle	Psoas
31	chr15:79032600-79033000	Enhancers	Right Ventricle	heart
32	chr15:79032600-79033000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
33	chr15:79032600-79033000	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
34	chr15:79032600-79033000	Enhancers	HMEC	breast
35	chr15:79032600-79033200	Enhancers	Primary neutrophils fromperipheralblood	blood
36	chr15:79032600-79033200	Enhancers	K562	blood
37	chr15:79032600-79033400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr15:79032600-79033400	Enhancers	Gastric	stomach
39	chr15:79032600-79033600	Enhancers	HUES6 Cell Line	embryonic stem cell
40	chr15:79032600-79034000	Enhancers	H1 Cell Line	embryonic stem cell

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