Variant report

Variant	rs2018095
Chromosome Location	chr20:24561136-24561137
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1326299	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1409371	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1575873	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1980823	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4815275	0.86[ASN][1000 genomes]
rs4815278	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6036837	0.88[ASN][1000 genomes]
rs6049781	0.83[EUR][1000 genomes]
rs6076238	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6083558	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6083562	0.98[ASN][1000 genomes]
rs6132750	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6138330	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6138331	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6138332	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3332519	chr20:24535099-24815615	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24538800-24570200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr20:24549800-24565800	Weak transcription	Thymus	Thymus
3	chr20:24552000-24562200	Weak transcription	Right Ventricle	heart
4	chr20:24553800-24564800	Weak transcription	Brain Anterior Caudate	brain
5	chr20:24554000-24564800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr20:24554600-24562000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr20:24555800-24564000	Weak transcription	Brain Hippocampus Middle	brain
8	chr20:24558800-24562400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr20:24559800-24563200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr20:24559800-24564000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr20:24560400-24561200	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr20:24560600-24561200	Enhancers	Brain Germinal Matrix	brain
13	chr20:24560800-24561800	Enhancers	Fetal Brain Male	brain
14	chr20:24560800-24564800	Weak transcription	Brain Angular Gyrus	brain
15	chr20:24560800-24565000	Weak transcription	Fetal Muscle Leg	muscle
16	chr20:24561000-24565000	Weak transcription	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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