Variant report

Variant	rs201822828
Chromosome Location	chr3:119301113-119301114
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:65)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:65 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MTA3	chr3:119300224-119301738	GM12878	blood:	n/a	n/a
2	FOXM1	chr3:119300912-119301424	GM12878	blood:	n/a	n/a
3	TBL1XR1	chr3:119300977-119301417	GM12878	blood:	n/a	n/a
4	ELK1	chr3:119301068-119301206	GM12878	blood:	n/a	n/a
5	POLR2A	chr3:119300232-119301472	GM12892	blood:	n/a	n/a
6	EP300	chr3:119300933-119301363	GM12878	blood:	n/a	n/a
7	BHLHE40	chr3:119300502-119301334	GM12878	blood:	n/a	n/a
8	RELA	chr3:119300599-119301445	GM18951	blood:	n/a	n/a
9	NFIC	chr3:119300909-119301498	GM12878	blood:	n/a	n/a
10	ATF2	chr3:119300762-119301323	GM12878	blood:	n/a	n/a
11	POLR2A	chr3:119300315-119301333	GM12878	blood:	n/a	n/a
12	EP300	chr3:119300928-119301464	GM12878	blood:	n/a	n/a
13	RELA	chr3:119300998-119301452	GM12891	blood:	n/a	n/a
14	RELA	chr3:119300902-119301430	GM12878	blood:	n/a	n/a
15	WRNIP1	chr3:119300298-119301768	GM12878	blood:	n/a	n/a
16	TCF12	chr3:119300929-119301392	GM12878	blood:	n/a	n/a
17	POLR2A	chr3:119300877-119301457	GM12878	blood:	n/a	n/a
18	MAZ	chr3:119300803-119301232	GM12878	blood:	n/a	n/a
19	RELA	chr3:119300999-119301415	GM18505	blood:	n/a	n/a
20	MXI1	chr3:119301083-119301369	GM12878	blood:	n/a	n/a
21	POLR2A	chr3:119300306-119301279	GM12892	blood:	n/a	n/a
22	STAT5A	chr3:119300885-119301344	GM12878	blood:	n/a	n/a
23	ATF2	chr3:119300642-119301539	GM12878	blood:	n/a	n/a
24	RELA	chr3:119301010-119301402	GM19193	blood:	n/a	n/a
25	RELA	chr3:119301010-119301585	GM19099	blood:	n/a	n/a
26	NFATC1	chr3:119300364-119301458	GM12878	blood:	n/a	n/a
27	POLR2A	chr3:119300164-119301211	GM12878	blood:	n/a	n/a
28	POLR2A	chr3:119300092-119301419	GM12892	blood:	n/a	n/a
29	STAT3	chr3:119300723-119301305	GM12878	blood:	n/a	n/a
30	IKZF1	chr3:119300748-119301388	GM12878	blood:	n/a	n/a
31	SPI1	chr3:119300909-119301258	GM12878	blood:	n/a	n/a
32	RELA	chr3:119301004-119301619	GM10847	blood:	n/a	n/a
33	NFATC1	chr3:119300355-119301507	GM12878	blood:	n/a	n/a
34	RELA	chr3:119301013-119301423	GM12892	blood:	n/a	n/a
35	CREB1	chr3:119300373-119301811	GM12878	blood:	n/a	n/a
36	POLR2A	chr3:119300537-119301376	GM12892	blood:	n/a	n/a
37	NFIC	chr3:119300730-119301563	GM12878	blood:	n/a	n/a
38	RUNX3	chr3:119300958-119301362	GM12878	blood:	n/a	n/a
39	PAX5	chr3:119301088-119301414	GM12878	blood:	n/a	n/a
40	BCL3	chr3:119301044-119301463	GM12878	blood:	n/a	n/a
41	EP300	chr3:119301094-119301315	GM12878	blood:	n/a	n/a
42	NFE2	chr3:119301100-119301184	GM12878	blood:	n/a	n/a
43	POLR2A	chr3:119300083-119301803	GM12878	blood:	n/a	n/a
44	STAT5A	chr3:119300798-119301478	GM12878	blood:	n/a	n/a
45	TBP	chr3:119301007-119301327	GM12878	blood:	n/a	n/a
46	PML	chr3:119300090-119301426	GM12878	blood:	n/a	n/a
47	STAT1	chr3:119301102-119301255	GM12878	blood:	n/a	n/a
48	PAX5	chr3:119301053-119301420	GM12878	blood:	n/a	n/a
49	POLR2A	chr3:119300982-119301222	GM12878	blood:	n/a	n/a
50	RUNX3	chr3:119300734-119301450	GM12878	blood:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:119297885..119300271-chr3:119300327..119302628,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000272967	TF binding region
ENSG00000272967	Chromatin interaction
ENSG00000144843	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv829695	chr3:119178890-119367996	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	esv1831824	chr3:119263607-119402474	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv3963	chr3:119301064-119345904	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119299200-119303400	Weak transcription	Aorta	Aorta
2	chr3:119299200-119307800	Weak transcription	Esophagus	oesophagus
3	chr3:119299200-119308000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:119299200-119314600	Weak transcription	Ovary	ovary
5	chr3:119299200-119315000	Weak transcription	Gastric	stomach
6	chr3:119299400-119301200	Enhancers	Primary B cells from peripheral blood	blood
7	chr3:119299400-119304000	Weak transcription	HSMMtube	muscle
8	chr3:119299400-119306200	Weak transcription	Primary B cells from cord blood	blood
9	chr3:119299400-119306400	Weak transcription	Fetal Intestine Large	intestine
10	chr3:119299400-119307400	Weak transcription	Thymus	Thymus
11	chr3:119299400-119307800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr3:119299400-119314200	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr3:119299400-119314400	Weak transcription	Brain Angular Gyrus	brain
14	chr3:119299600-119303400	Weak transcription	Colon Smooth Muscle	Colon
15	chr3:119299600-119303400	Weak transcription	Placenta	Placenta
16	chr3:119299600-119303600	Weak transcription	Lung	lung
17	chr3:119299600-119304200	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr3:119299600-119304200	Weak transcription	Osteobl	bone
19	chr3:119299600-119304800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr3:119299600-119305000	Weak transcription	Fetal Stomach	stomach
21	chr3:119299600-119305000	Weak transcription	Right Ventricle	heart
22	chr3:119299600-119305000	Weak transcription	HSMM	muscle
23	chr3:119299600-119305200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr3:119299600-119305200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr3:119299600-119305200	Weak transcription	Pancreas	Pancrea
26	chr3:119299600-119306600	Weak transcription	Fetal Kidney	kidney
27	chr3:119299600-119307200	Weak transcription	Duodenum Mucosa	Duodenum
28	chr3:119299600-119307200	Weak transcription	Fetal Intestine Small	intestine
29	chr3:119299600-119307200	Weak transcription	Fetal Lung	lung
30	chr3:119299600-119307200	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr3:119299600-119307400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr3:119299600-119307800	Weak transcription	Brain Hippocampus Middle	brain
33	chr3:119299600-119308000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr3:119299600-119314200	Weak transcription	Brain Substantia Nigra	brain
35	chr3:119299600-119314200	Weak transcription	Psoas Muscle	Psoas
36	chr3:119299800-119301200	Weak transcription	Fetal Muscle Leg	muscle
37	chr3:119299800-119303600	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr3:119299800-119303800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr3:119299800-119304000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr3:119299800-119304800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr3:119299800-119305000	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr3:119299800-119305200	Weak transcription	Adipose Nuclei	Adipose
43	chr3:119299800-119305400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr3:119299800-119305400	Weak transcription	Stomach Smooth Muscle	stomach
45	chr3:119299800-119307200	Weak transcription	Primary hematopoietic stem cells	blood
46	chr3:119299800-119308000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr3:119299800-119308000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr3:119299800-119309200	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr3:119299800-119314600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr3:119299800-119314600	Weak transcription	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links