Variant report

Variant	rs2018527
Chromosome Location	chr11:47175809-47175810
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:46867413..46869550-chr11:47174916..47176891,2	K562	blood:
2	chr11:46910320..46911827-chr11:47174259..47175968,19	MCF-7	breast:
3	chr11:46910842..46911409-chr11:47175395..47176304,2	K562	blood:
4	chr11:46958122..46959949-chr11:47174429..47176046,2	MCF-7	breast:
5	chr11:46910425..46912611-chr11:47175096..47177749,2	K562	blood:

Variant related genes	Relation type
ENSG00000149179	Chromatin interaction
ENSG00000247675	Chromatin interaction
ENSG00000134569	Chromatin interaction
ENSG00000175216	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10466478	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1055447	0.94[ASN][1000 genomes]
rs1060573	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10769230	0.83[ASN][1000 genomes]
rs10769233	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10769234	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10769239	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10838654	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10838659	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838660	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11039074	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11039086	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11039097	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11039105	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11039107	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11039112	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11039119	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11039124	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11039134	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11600668	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12224096	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12291341	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12796744	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12807887	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1872896	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1965952	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1976142	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1976143	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2029298	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4237547	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4319472	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4567413	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4579897	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4752952	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4752957	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4752962	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4752963	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4752967	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4752971	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57323109	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6485721	0.86[ASN][1000 genomes]
rs6485722	0.85[ASN][1000 genomes]
rs6485739	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7103581	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7108902	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7111764	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7118546	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7119952	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7121418	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7125807	0.86[ASN][1000 genomes]
rs7128325	0.86[ASN][1000 genomes]
rs747650	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7479189	0.89[ASN][1000 genomes]
rs7937101	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7937950	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7942473	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7945315	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7946709	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7947878	0.82[ASN][1000 genomes]
rs9633886	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47160000-47176400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr11:47161600-47176000	Weak transcription	Dnd41	blood
3	chr11:47165000-47184800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr11:47165000-47185000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr11:47165200-47185600	Weak transcription	Aorta	Aorta
6	chr11:47165400-47177600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:47165400-47188600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:47165600-47177600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr11:47165600-47177800	Weak transcription	NHEK	skin
10	chr11:47168600-47177800	Weak transcription	A549	lung
11	chr11:47169200-47176000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr11:47170800-47176800	Weak transcription	Lung	lung
13	chr11:47171000-47177200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr11:47171000-47177600	Weak transcription	Esophagus	oesophagus
15	chr11:47171000-47183400	Weak transcription	Gastric	stomach
16	chr11:47171200-47176000	Weak transcription	Fetal Brain Female	brain
17	chr11:47171200-47177600	Weak transcription	Ovary	ovary
18	chr11:47171400-47186000	Weak transcription	Rectal Smooth Muscle	rectum
19	chr11:47171600-47186400	Weak transcription	Psoas Muscle	Psoas
20	chr11:47173800-47176000	Enhancers	Rectal Mucosa Donor 29	rectum
21	chr11:47173800-47176400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chr11:47173800-47176800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr11:47173800-47177000	Enhancers	Fetal Muscle Trunk	muscle
24	chr11:47173800-47178000	Enhancers	Fetal Thymus	thymus
25	chr11:47174000-47176000	Enhancers	Primary T cells from cord blood	blood
26	chr11:47174000-47176000	Enhancers	Fetal Muscle Leg	muscle
27	chr11:47174000-47176600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr11:47174000-47176600	Enhancers	Primary T helper cells PMA-I stimulated	--
29	chr11:47174000-47176800	Enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr11:47174000-47176800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr11:47174000-47178000	Enhancers	Primary T cells fromperipheralblood	blood
32	chr11:47174200-47176000	Enhancers	HSMMtube	muscle
33	chr11:47174200-47176200	Enhancers	Primary T killer memory cells from peripheral blood	blood
34	chr11:47174200-47176200	Enhancers	NHLF	lung
35	chr11:47174200-47176400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr11:47174200-47176400	Enhancers	Brain Inferior Temporal Lobe	brain
37	chr11:47174200-47176400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
38	chr11:47174200-47177400	Enhancers	Thymus	Thymus
39	chr11:47174200-47177800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
40	chr11:47174200-47178000	Enhancers	Brain Anterior Caudate	brain
41	chr11:47174400-47176200	Enhancers	Skeletal Muscle Female	skeletal muscle
42	chr11:47174400-47176200	Enhancers	Osteobl	bone
43	chr11:47174400-47176600	Enhancers	Cortex derived primary cultured neurospheres	brain
44	chr11:47174400-47177000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr11:47174800-47176000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr11:47174800-47176000	Enhancers	NH-A	brain
47	chr11:47174800-47176600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
48	chr11:47174800-47178600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr11:47174800-47179000	Weak transcription	Spleen	Spleen
50	chr11:47174800-47179200	Weak transcription	Primary monocytes fromperipheralblood	blood

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