Variant report

Variant	rs202084343
Chromosome Location	chr15:56174756-56174757
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv457157	chr15:55722213-56255774	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv569539	chr15:55722213-56255774	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	esv2761966	chr15:56167250-56192861	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv3361699	chr15:56173709-56192307	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56149000-56177600	Weak transcription	Spleen	Spleen
2	chr15:56153000-56174800	Weak transcription	Fetal Intestine Small	intestine
3	chr15:56153000-56176400	Weak transcription	Esophagus	oesophagus
4	chr15:56153600-56178600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr15:56155400-56174800	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr15:56155400-56175600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr15:56158200-56176400	Weak transcription	Left Ventricle	heart
8	chr15:56161200-56179800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr15:56161400-56177400	Weak transcription	Duodenum Mucosa	Duodenum
10	chr15:56165600-56174800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr15:56166000-56185400	Weak transcription	Hela-S3	cervix
12	chr15:56167800-56176200	Weak transcription	Psoas Muscle	Psoas
13	chr15:56171400-56177600	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr15:56171600-56175600	Weak transcription	Aorta	Aorta
15	chr15:56171800-56176400	Weak transcription	HUVEC	blood vessel
16	chr15:56172000-56177200	Weak transcription	Fetal Stomach	stomach
17	chr15:56172000-56177600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr15:56172000-56186200	Weak transcription	Osteobl	bone
19	chr15:56172800-56176400	Weak transcription	Stomach Smooth Muscle	stomach
20	chr15:56172800-56176800	Weak transcription	Pancreas	Pancrea
21	chr15:56172800-56189600	Weak transcription	Placenta	Placenta
22	chr15:56173200-56175600	Weak transcription	Right Ventricle	heart
23	chr15:56173400-56174800	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr15:56174000-56175600	Genic enhancers	A549	lung
25	chr15:56174200-56175000	Strong transcription	Liver	Liver
26	chr15:56174200-56177400	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr15:56174400-56174800	ZNF genes & repeats	Lung	lung
28	chr15:56174400-56175000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr15:56174400-56175000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr15:56174400-56175000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr15:56174400-56175200	Strong transcription	Muscle Satellite Cultured Cells	--
32	chr15:56174400-56175600	Strong transcription	HSMMtube	muscle
33	chr15:56174400-56175600	Strong transcription	NHEK	skin
34	chr15:56174400-56175800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr15:56174400-56175800	Strong transcription	HSMM	muscle
36	chr15:56174400-56177800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr15:56174600-56175400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr15:56174600-56175400	Strong transcription	Primary T cells from cord blood	blood
39	chr15:56174600-56175400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr15:56174600-56175600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr15:56174600-56175800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr15:56174600-56176000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr15:56174600-56181000	Weak transcription	Primary hematopoietic stem cells	blood

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