Variant report

Variant	rs202107029
Chromosome Location	chr3:142412965-142412966
allele	-/TG
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:142409223..142411101-chr3:142411877..142413945,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932989	chr3:142204208-142423305	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv591920	chr3:142411200-142496951	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv521098	chr3:142411200-142503605	Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv222962	chr3:142412964-142412965	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142366000-142435400	Weak transcription	Colonic Mucosa	Colon
2	chr3:142379200-142413000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:142385800-142415400	Weak transcription	A549	lung
4	chr3:142387400-142413400	Weak transcription	Stomach Mucosa	stomach
5	chr3:142389200-142414800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr3:142389800-142442400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr3:142392800-142418000	Weak transcription	HepG2	liver
8	chr3:142392800-142425400	Weak transcription	Dnd41	blood
9	chr3:142392800-142433000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr3:142393000-142426000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr3:142393400-142426200	Weak transcription	Primary hematopoietic stem cells	blood
12	chr3:142404200-142418000	Weak transcription	HMEC	breast
13	chr3:142404600-142416200	Weak transcription	Fetal Intestine Small	intestine
14	chr3:142407200-142417000	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr3:142408800-142430400	Weak transcription	Liver	Liver
16	chr3:142411800-142413600	Enhancers	NHEK	skin
17	chr3:142412000-142413200	Strong transcription	Duodenum Mucosa	Duodenum
18	chr3:142412400-142413400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr3:142412400-142413400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr3:142412800-142416600	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr3:142412800-142426600	Weak transcription	Rectal Mucosa Donor 29	rectum

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