Variant report

Variant	rs202155
Chromosome Location	chr7:101639759-101639760
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:101634157..101637054-chr7:101638722..101641195,2	MCF-7	breast:
2	chr7:101625094..101626938-chr7:101639657..101641295,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs202147	1.00[CHB][hapmap]
rs202154	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs202156	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs202157	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs202158	0.94[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs202159	0.94[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs202162	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4727515	1.00[CHB][hapmap]
rs4727516	1.00[CHB][hapmap]
rs4729768	1.00[CHB][hapmap]
rs6465845	1.00[CHB][hapmap]
rs7799576	1.00[CHB][hapmap]
rs7809629	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024319	chr7:101368299-101668159	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv539047	chr7:101368299-101668159	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv1020372	chr7:101420819-101718950	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv482846	chr7:101539981-101707666	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv888827	chr7:101562674-101650302	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv482521	chr7:101604002-101718950	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv831080	chr7:101629121-101718950	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv981839	chr7:101632578-101663728	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101578200-101671200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr7:101597000-101642000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr7:101614400-101646400	Weak transcription	Fetal Brain Female	brain
4	chr7:101620200-101642000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr7:101627000-101647400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr7:101627000-101671200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr7:101628000-101651600	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr7:101629000-101651600	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr7:101629600-101641400	Weak transcription	Brain Hippocampus Middle	brain
10	chr7:101630000-101641000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr7:101630000-101641200	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr7:101630000-101641400	Weak transcription	Aorta	Aorta
13	chr7:101630000-101668000	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr7:101630400-101640000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr7:101630400-101641200	Weak transcription	Stomach Smooth Muscle	stomach
16	chr7:101630400-101643800	Weak transcription	Right Atrium	heart
17	chr7:101630400-101646600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr7:101630600-101641200	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr7:101630600-101641200	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr7:101630600-101641400	Weak transcription	Psoas Muscle	Psoas
21	chr7:101630600-101641400	Weak transcription	Spleen	Spleen
22	chr7:101630600-101641600	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr7:101630600-101642000	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr7:101630600-101642000	Weak transcription	Rectal Smooth Muscle	rectum
25	chr7:101630800-101652400	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr7:101631000-101644000	Weak transcription	Esophagus	oesophagus
27	chr7:101632000-101641400	Weak transcription	Fetal Heart	heart
28	chr7:101632400-101641400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr7:101632600-101640000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr7:101633000-101640200	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr7:101633000-101646600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr7:101633200-101649000	Weak transcription	Lung	lung
33	chr7:101633400-101651400	Weak transcription	Gastric	stomach
34	chr7:101633600-101641000	Weak transcription	Fetal Muscle Leg	muscle
35	chr7:101633600-101641400	Weak transcription	Fetal Intestine Large	intestine
36	chr7:101634400-101649800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr7:101634400-101651600	Weak transcription	Duodenum Mucosa	Duodenum
38	chr7:101634600-101640800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr7:101634600-101641000	Enhancers	Fetal Thymus	thymus
40	chr7:101634600-101652000	Weak transcription	Primary T cells from cord blood	blood
41	chr7:101635000-101652000	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr7:101635200-101643000	Strong transcription	Fetal Intestine Small	intestine
43	chr7:101635600-101643600	Weak transcription	Monocytes-CD14+_RO01746	blood
44	chr7:101635800-101640200	Weak transcription	Placenta	Placenta
45	chr7:101635800-101641600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr7:101635800-101651400	Weak transcription	HepG2	liver
47	chr7:101636000-101640000	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr7:101636000-101641200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr7:101636000-101641600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr7:101636000-101641600	Weak transcription	A549	lung

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