Variant report

Variant	rs202194496
Chromosome Location	chr10:51024629-51024630
allele	-/TTTC
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	esv2758219	chr10:50971974-51925166	Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	esv2759749	chr10:50971974-51925166	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	nsv428232	chr10:50971974-51925166	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
5	nsv895379	chr10:51022933-51187793	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv947981	chr10:51023203-51025573	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:51019800-51053400	Weak transcription	Small Intestine	intestine
2	chr10:51020000-51025200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr10:51020400-51049600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr10:51020800-51025400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr10:51021200-51025400	Weak transcription	Aorta	Aorta
6	chr10:51021200-51025800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr10:51021200-51026800	Weak transcription	Gastric	stomach
8	chr10:51021400-51025000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr10:51021400-51025200	Weak transcription	Brain Anterior Caudate	brain
10	chr10:51021400-51025400	Weak transcription	Brain Cingulate Gyrus	brain
11	chr10:51021400-51025400	Weak transcription	Brain Hippocampus Middle	brain
12	chr10:51021400-51025600	Weak transcription	GM12878-XiMat	blood
13	chr10:51021600-51025000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr10:51021600-51025200	Weak transcription	Stomach Smooth Muscle	stomach
15	chr10:51021600-51025400	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr10:51021600-51025800	Weak transcription	Liver	Liver
17	chr10:51021800-51024800	Weak transcription	Fetal Brain Female	brain
18	chr10:51021800-51025200	Weak transcription	Fetal Stomach	stomach
19	chr10:51021800-51025200	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr10:51021800-51025400	Weak transcription	Fetal Intestine Large	intestine
21	chr10:51021800-51025600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr10:51021800-51025600	Weak transcription	Ovary	ovary
23	chr10:51021800-51025600	Weak transcription	Thymus	Thymus
24	chr10:51021800-51032800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr10:51021800-51033400	Weak transcription	Osteobl	bone
26	chr10:51021800-51039600	Weak transcription	Psoas Muscle	Psoas
27	chr10:51022000-51025200	Weak transcription	Duodenum Mucosa	Duodenum
28	chr10:51022000-51025400	Weak transcription	Fetal Muscle Trunk	muscle
29	chr10:51022000-51025400	Weak transcription	Fetal Thymus	thymus
30	chr10:51022000-51025600	Weak transcription	Hela-S3	cervix
31	chr10:51022000-51027000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr10:51022000-51027000	Weak transcription	NHEK	skin
33	chr10:51022000-51027200	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr10:51022000-51027200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr10:51022000-51027200	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr10:51022000-51027200	Weak transcription	Right Ventricle	heart
37	chr10:51022000-51030200	Weak transcription	Fetal Kidney	kidney
38	chr10:51022200-51027000	Weak transcription	Rectal Smooth Muscle	rectum
39	chr10:51022200-51027400	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr10:51022200-51034800	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr10:51022400-51025400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr10:51022400-51027000	Weak transcription	Lung	lung
43	chr10:51022600-51025600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr10:51022600-51025600	Weak transcription	HUVEC	blood vessel
45	chr10:51022600-51035800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr10:51022800-51025000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr10:51022800-51025600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
48	chr10:51022800-51030000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr10:51023000-51025400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr10:51023000-51025400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links