Variant report

Variant	rs2022168
Chromosome Location	chr1:172724394-172724395
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:172723346..172726622-chr1:172728222..172731165,3	MCF-7	breast:
2	chr1:172723025..172725126-chr1:172725246..172727256,2	MCF-7	breast:
3	chr1:172719731..172722096-chr1:172724351..172726737,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11581258	0.85[CHB][hapmap];0.82[GIH][hapmap];0.82[JPT][hapmap];0.84[TSI][hapmap]
rs11587368	0.89[ASW][hapmap];0.85[CHB][hapmap];0.81[CHD][hapmap];0.82[GIH][hapmap];0.82[JPT][hapmap];0.80[MEX][hapmap];0.93[TSI][hapmap];0.80[EUR][1000 genomes]
rs11589360	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11810529	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12089435	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12141975	0.81[AMR][1000 genomes]
rs12760127	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12760147	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1476423	0.92[CEU][hapmap];0.85[CHB][hapmap];0.86[MEX][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1492905	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17370861	0.80[GIH][hapmap];0.84[TSI][hapmap]
rs17370938	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2023623	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35319454	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs36060149	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56298311	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61810478	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6703999	0.92[CEU][hapmap];0.85[CHB][hapmap];0.87[MEX][hapmap]
rs704846	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs733684	0.92[CEU][hapmap];0.85[CHB][hapmap];0.87[MEX][hapmap]
rs859625	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs859626	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs859627	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs859629	0.85[JPT][hapmap]
rs859630	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs974856	0.85[CHB][hapmap];0.82[JPT][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2022168	SELE	cis	parietal	SCAN
rs2022168	C1orf112	cis	parietal	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172716400-172729400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:172722200-172724400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr1:172722800-172724400	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr1:172722800-172724800	Enhancers	Primary B cells from cord blood	blood
5	chr1:172723000-172725000	Enhancers	Primary B cells from peripheral blood	blood
6	chr1:172723800-172724600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr1:172724000-172725600	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr1:172724200-172725200	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr1:172724200-172725400	Weak transcription	Primary hematopoietic stem cells	blood

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