Variant report

Variant	rs2022717
Chromosome Location	chr14:37426466-37426467
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12587486	0.83[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs1429840	0.82[CHB][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs17105720	0.89[ASN][1000 genomes]
rs17105756	0.94[ASN][1000 genomes]
rs2021932	0.83[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs712404	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs7145237	0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7147514	0.86[EUR][1000 genomes]
rs7147556	0.81[CEU][hapmap];0.86[EUR][1000 genomes]
rs7150167	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs8014926	1.00[CHB][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs8015456	0.82[CHB][hapmap];0.94[JPT][hapmap]
rs848702	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs861924	0.93[JPT][hapmap]
rs861925	0.83[CHB][hapmap];0.94[JPT][hapmap]
rs861928	0.82[CHB][hapmap];0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047290	chr14:36564568-37445157	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
2	nsv534288	chr14:37254539-37697745	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1050254	chr14:37400173-37445157	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:37413800-37437400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:37423600-37426600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr14:37423600-37428400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr14:37424800-37428200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr14:37426400-37426600	Enhancers	Gastric	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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