Variant report

Variant	rs2025557
Chromosome Location	chr9:17726581-17726582
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10117049	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10738482	0.87[MEX][hapmap]
rs10738485	0.87[MEX][hapmap]
rs12341417	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.91[MEX][hapmap];0.90[MKK][hapmap];0.98[TSI][hapmap];0.93[YRI][hapmap]
rs1536073	0.95[CHB][hapmap];0.86[MEX][hapmap]
rs2025558	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2025559	0.85[CHB][hapmap]
rs2182084	0.91[MEX][hapmap];0.84[TSI][hapmap]
rs2182087	0.82[MEX][hapmap]
rs2182090	0.82[MEX][hapmap];0.84[TSI][hapmap]
rs2209437	0.84[CEU][hapmap];0.81[CHB][hapmap];0.87[CHD][hapmap];0.87[MEX][hapmap];0.82[TSI][hapmap]
rs2209438	0.92[CEU][hapmap];0.89[CHB][hapmap]
rs2209439	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs2224957	0.89[LWK][hapmap]
rs3780232	0.87[MEX][hapmap]
rs3780234	0.91[MEX][hapmap];0.86[TSI][hapmap]
rs3808689	0.96[CEU][hapmap]
rs3808690	0.96[CEU][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes]
rs3808700	0.95[MEX][hapmap];0.84[TSI][hapmap]
rs3808708	0.87[MEX][hapmap]
rs3808711	0.82[MEX][hapmap]
rs3808712	0.87[MEX][hapmap]
rs3808713	0.86[MEX][hapmap];0.82[TSI][hapmap]
rs3808718	0.87[MEX][hapmap]
rs3808720	0.82[MEX][hapmap]
rs4418424	0.87[MEX][hapmap]
rs4601434	0.82[MEX][hapmap]
rs7021836	0.91[MEX][hapmap]
rs717373	0.95[CHB][hapmap];0.84[GIH][hapmap];0.95[MEX][hapmap];0.87[TSI][hapmap];0.82[EUR][1000 genomes]
rs7850335	0.80[CHB][hapmap]
rs7870919	0.87[MEX][hapmap];0.82[TSI][hapmap]
rs7874762	0.82[MEX][hapmap]
rs7875763	0.85[CHB][hapmap];0.87[MEX][hapmap];0.82[TSI][hapmap]
rs998599	0.95[MEX][hapmap];0.84[TSI][hapmap];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892675	chr9:17694823-17790526	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv466279	chr9:17699981-17726581	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
3	nsv613705	chr9:17699981-17726581	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
4	nsv613706	chr9:17718918-18090934	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv613707	chr9:17720175-18070475	Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv613708	chr9:17720175-18072085	Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2025557	IFNA8	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:17725800-17726800	Enhancers	Liver	Liver

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