Variant report

Variant	rs2025945
Chromosome Location	chr13:51577115-51577116
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:51571465..51573416-chr13:51575852..51577394,2	K562	blood:
2	chr13:51567157..51569234-chr13:51575809..51577894,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2281992	0.89[ASW][hapmap];0.96[CEU][hapmap];0.83[TSI][hapmap];0.89[EUR][1000 genomes]
rs7322013	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs7332630	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs7334102	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs7996733	0.81[EUR][1000 genomes]
rs7996960	0.88[CEU][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2025945	FNDC3A	cis	cerebellum	SCAN
rs2025945	GNPDA1	cis	Cerebellum	GTEx

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51568000-51579800	Weak transcription	Pancreas	Pancrea
2	chr13:51573800-51577400	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr13:51575400-51578200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr13:51575400-51578400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr13:51575400-51579000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr13:51575400-51579000	Weak transcription	Right Atrium	heart
7	chr13:51575400-51579200	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr13:51575400-51580200	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr13:51575600-51578400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr13:51575600-51578400	Weak transcription	Esophagus	oesophagus
11	chr13:51575600-51578800	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr13:51575600-51579000	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr13:51575600-51579200	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr13:51575600-51579200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr13:51575600-51579800	Weak transcription	Aorta	Aorta
16	chr13:51576000-51577800	Weak transcription	Fetal Muscle Leg	muscle
17	chr13:51576000-51579400	Weak transcription	Fetal Thymus	thymus
18	chr13:51576200-51577800	Weak transcription	Brain Germinal Matrix	brain
19	chr13:51576600-51577400	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr13:51576600-51578400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr13:51576600-51578400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr13:51577000-51577200	Enhancers	Fetal Lung	lung
23	chr13:51577000-51578200	Weak transcription	Fetal Intestine Large	intestine
24	chr13:51577000-51578800	Weak transcription	Fetal Intestine Small	intestine

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