The 2.0 version of rSNPBase

Variant report

Variant rs2028078
Chromosome Location chr17:43475929-43475930
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:94 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:43463000-43482400 Weak transcription H9 Cell Line embryonic stem cell
2 chr17:43470600-43482400 Strong transcription Rectal Mucosa Donor 29 rectum
3 chr17:43470800-43483000 Strong transcription Lung lung
4 chr17:43470800-43483200 Strong transcription Monocytes-CD14+_RO01746 blood
5 chr17:43470800-43483400 Strong transcription Primary neutrophils fromperipheralblood blood
6 chr17:43470800-43483600 Strong transcription Primary mononuclear cells fromperipheralblood Blood
7 chr17:43471000-43482800 Strong transcription Primary B cells from peripheral blood blood
8 chr17:43471000-43483200 Strong transcription Primary T regulatory cells fromperipheralblood blood
9 chr17:43471000-43484400 Strong transcription Thymus Thymus
10 chr17:43471400-43477000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
11 chr17:43471400-43483000 Strong transcription Primary monocytes fromperipheralblood blood
12 chr17:43471400-43483400 Strong transcription Dnd41 blood
13 chr17:43471600-43483200 Strong transcription Sigmoid Colon Sigmoid Colon
14 chr17:43471600-43483400 Strong transcription Primary T helper cells fromperipheralblood blood
15 chr17:43471600-43483800 Strong transcription Primary T helper naive cells fromperipheralblood blood
16 chr17:43471600-43484600 Strong transcription Primary T cells from cord blood blood
17 chr17:43471800-43483600 Strong transcription Primary T helper 17 cells PMA-I stimulated --
18 chr17:43471800-43483600 Strong transcription GM12878-XiMat blood
19 chr17:43471800-43483800 Strong transcription Primary T helper cells PMA-I stimulated --
20 chr17:43472000-43483200 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
21 chr17:43472400-43483000 Strong transcription Primary hematopoietic stem cells short term culture blood
22 chr17:43472600-43477000 Weak transcription Fetal Heart heart
23 chr17:43472600-43477600 Weak transcription HMEC breast
24 chr17:43472600-43478200 Weak transcription NHEK skin
25 chr17:43472600-43478800 Weak transcription Hela-S3 cervix
26 chr17:43472600-43481800 Weak transcription Stomach Mucosa stomach
27 chr17:43472600-43482200 Weak transcription HUES48 Cell Line embryonic stem cell
28 chr17:43472600-43482200 Weak transcription iPS-18 Cell Line embryonic stem cell
29 chr17:43472600-43483000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
30 chr17:43472600-43483200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
31 chr17:43472600-43484200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
32 chr17:43472600-43485600 Weak transcription HSMMtube muscle
33 chr17:43472800-43479000 Weak transcription Primary T killer memory cells from peripheral blood blood
34 chr17:43472800-43481600 Strong transcription Primary T cells fromperipheralblood blood
35 chr17:43472800-43481800 Strong transcription Placenta Placenta
36 chr17:43472800-43483000 Strong transcription Primary Natural Killer cells fromperipheralblood blood
37 chr17:43472800-43487400 Weak transcription HUVEC blood vessel
38 chr17:43473000-43476200 Weak transcription Brain Cingulate Gyrus brain
39 chr17:43473000-43476600 Strong transcription A549 lung
40 chr17:43473000-43476800 Strong transcription Primary hematopoietic stem cells blood
41 chr17:43473000-43478400 Weak transcription Liver Liver
42 chr17:43473000-43478400 Weak transcription Brain Hippocampus Middle brain
43 chr17:43473000-43480200 Weak transcription Brain Inferior Temporal Lobe brain
44 chr17:43473000-43481000 Weak transcription Brain Angular Gyrus brain
45 chr17:43473000-43481000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
46 chr17:43473000-43482000 Weak transcription HUES6 Cell Line embryonic stem cell
47 chr17:43473000-43482000 Strong transcription Duodenum Mucosa Duodenum
48 chr17:43473000-43482200 Strong transcription Rectal Mucosa Donor 31 rectum
49 chr17:43473000-43483000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
50 chr17:43473000-43483000 Weak transcription Fetal Kidney kidney

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Last update: Aug 31, 2015