Variant report

Variant	rs2029394
Chromosome Location	chr6:74961050-74961051
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs1038684	0.88[EUR][1000 genomes]
rs10485385	0.88[EUR][1000 genomes]
rs10485386	0.88[EUR][1000 genomes]
rs10485387	0.88[EUR][1000 genomes]
rs10805997	0.88[EUR][1000 genomes]
rs12175094	0.88[EUR][1000 genomes]
rs12523779	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12524014	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12525068	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12527310	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12528947	0.90[EUR][1000 genomes]
rs1387418	0.88[EUR][1000 genomes]
rs1387419	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1387420	0.88[EUR][1000 genomes]
rs1416395	0.86[EUR][1000 genomes]
rs1416396	0.86[EUR][1000 genomes]
rs1416397	0.84[EUR][1000 genomes]
rs1416398	0.88[EUR][1000 genomes]
rs1489380	0.88[EUR][1000 genomes]
rs1552564	0.88[EUR][1000 genomes]
rs1552565	0.86[EUR][1000 genomes]
rs16884558	0.88[EUR][1000 genomes]
rs16884590	0.88[EUR][1000 genomes]
rs1844317	0.88[EUR][1000 genomes]
rs1953176	0.88[EUR][1000 genomes]
rs2029393	0.88[EUR][1000 genomes]
rs2068742	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2200809	0.88[EUR][1000 genomes]
rs34261519	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4120421	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4706577	0.88[EUR][1000 genomes]
rs4706578	0.88[EUR][1000 genomes]
rs4708141	0.88[EUR][1000 genomes]
rs4708142	0.88[EUR][1000 genomes]
rs60997457	0.82[EUR][1000 genomes]
rs67514214	0.82[EUR][1000 genomes]
rs6907419	0.81[EUR][1000 genomes]
rs72950553	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72953713	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72953738	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72953745	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72954310	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72959610	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72959903	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72964264	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72964267	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72967270	0.89[EUR][1000 genomes]
rs73460274	0.82[EUR][1000 genomes]
rs7746000	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7752957	0.88[EUR][1000 genomes]
rs7776197	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9293958	0.86[EUR][1000 genomes]
rs9293959	0.88[EUR][1000 genomes]
rs9293960	0.88[EUR][1000 genomes]
rs9293962	0.88[EUR][1000 genomes]
rs9293964	0.88[EUR][1000 genomes]
rs9341460	0.89[EUR][1000 genomes]
rs9341461	0.82[EUR][1000 genomes]
rs9343123	0.88[EUR][1000 genomes]
rs9343127	0.82[EUR][1000 genomes]
rs9343128	0.82[EUR][1000 genomes]
rs9343138	0.81[EUR][1000 genomes]
rs9352083	0.88[EUR][1000 genomes]
rs9352084	0.88[EUR][1000 genomes]
rs9352085	0.88[EUR][1000 genomes]
rs9352087	0.88[EUR][1000 genomes]
rs9359076	0.88[EUR][1000 genomes]
rs9360757	0.88[EUR][1000 genomes]
rs9360759	0.88[EUR][1000 genomes]
rs9360761	0.88[EUR][1000 genomes]
rs9360763	0.88[EUR][1000 genomes]
rs9360766	0.84[EUR][1000 genomes]
rs9360769	0.82[EUR][1000 genomes]
rs9360770	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3327625	chr6:74716120-74971605	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv886162	chr6:74903797-75006170	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv886163	chr6:74944460-75006170	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
4	nsv886164	chr6:74944460-75024313	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74958000-74961400	Enhancers	HUVEC	blood vessel
2	chr6:74958800-74961400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:74959000-74961200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:74959200-74961600	Enhancers	Fetal Intestine Large	intestine
5	chr6:74959400-74961200	Weak transcription	Fetal Intestine Small	intestine
6	chr6:74959600-74963400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:74960000-74961400	Enhancers	HepG2	liver
8	chr6:74960200-74961400	Enhancers	Fetal Stomach	stomach
9	chr6:74960400-74961200	Weak transcription	NHLF	lung
10	chr6:74960400-74961600	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr6:74960400-74965600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr6:74960800-74961200	Weak transcription	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links