Variant report

Variant	rs2030546
Chromosome Location	chr2:33988877-33988878
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs4670280	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873794	chr2:33936701-34103546	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv873795	chr2:33939941-34064746	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv21301	chr2:33983236-33994164	Enhancers ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33987000-34000200	Weak transcription	Gastric	stomach
2	chr2:33988000-33992200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr2:33988200-33989200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr2:33988200-33991200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:33988400-33989000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr2:33988400-33989000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr2:33988400-33989000	Enhancers	Lung	lung
8	chr2:33988400-33989800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr2:33988400-33991000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr2:33988800-33989400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr2:33988800-33989800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr2:33988800-33990000	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr2:33988800-33991000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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