Variant report

Variant	rs2033612
Chromosome Location	chr4:142064796-142064797
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10028355	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1027815	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10519586	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1507178	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs187139	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs189568	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs354939	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs354941	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4123363	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4956515	0.98[EUR][1000 genomes]
rs4956516	0.98[EUR][1000 genomes]
rs4956517	0.98[EUR][1000 genomes]
rs4956518	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62324904	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62324905	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6835953	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6853785	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72724492	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7669929	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880167	chr4:141616979-142092124	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv880170	chr4:142046828-142137165	Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:142061200-142065200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr4:142062400-142066600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr4:142062600-142066800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr4:142064200-142065000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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