Variant report

Variant	rs2035515
Chromosome Location	chr8:107756661-107756662
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10086709	1.00[CEU][hapmap];0.82[CHB][hapmap];0.84[JPT][hapmap]
rs10087077	0.85[EUR][1000 genomes]
rs10088694	0.88[TSI][hapmap];0.82[EUR][1000 genomes]
rs10089357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10089618	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10089890	1.00[CEU][hapmap];0.82[CHB][hapmap];0.84[JPT][hapmap];0.84[EUR][1000 genomes]
rs10090534	1.00[CEU][hapmap];0.82[CHB][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10091390	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10091611	0.85[EUR][1000 genomes]
rs10092665	0.85[EUR][1000 genomes]
rs10099361	0.83[EUR][1000 genomes]
rs10100839	0.83[EUR][1000 genomes]
rs10101102	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10102112	0.83[EUR][1000 genomes]
rs10104941	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10106834	1.00[CEU][hapmap];0.82[CHB][hapmap];0.95[CHD][hapmap];0.96[GIH][hapmap];0.84[JPT][hapmap];0.88[TSI][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10108240	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10109609	0.88[TSI][hapmap]
rs10110610	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10283128	1.00[CEU][hapmap];0.82[CHB][hapmap];0.89[EUR][1000 genomes]
rs10283130	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.96[GIH][hapmap];0.89[JPT][hapmap];0.94[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1115200	0.87[CEU][hapmap]
rs12543558	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.96[GIH][hapmap];0.94[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12544138	0.85[EUR][1000 genomes]
rs12547372	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12547608	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12548149	0.89[EUR][1000 genomes]
rs13254031	0.85[EUR][1000 genomes]
rs13255878	0.85[EUR][1000 genomes]
rs13259080	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.96[GIH][hapmap];0.89[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13268490	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16875002	0.85[EUR][1000 genomes]
rs16875065	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[EUR][1000 genomes]
rs16875066	1.00[CEU][hapmap];0.82[CHB][hapmap];0.81[CHD][hapmap];0.96[GIH][hapmap];0.88[TSI][hapmap];0.89[EUR][1000 genomes]
rs1872282	1.00[CEU][hapmap];0.82[CHB][hapmap];0.88[CHD][hapmap];0.96[GIH][hapmap];0.88[TSI][hapmap];0.87[EUR][1000 genomes]
rs2035514	1.00[YRI][hapmap]
rs2126580	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28422868	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28808577	0.88[EUR][1000 genomes]
rs28921395	0.85[EUR][1000 genomes]
rs35108468	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35499727	0.89[EUR][1000 genomes]
rs35919651	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36011510	0.85[EUR][1000 genomes]
rs3736179	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3739323	1.00[YRI][hapmap]
rs3779996	1.00[CEU][hapmap];0.82[CHB][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59316573	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7461484	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9297385	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831419	chr8:107624709-107827801	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1032991	chr8:107756661-107819035	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2035515	TM7SF4	cis	cerebellum	SCAN

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107719600-107762400	Weak transcription	Lung	lung
2	chr8:107719600-107765600	Weak transcription	Colonic Mucosa	Colon
3	chr8:107719600-107775200	Weak transcription	Gastric	stomach
4	chr8:107719600-107777800	Weak transcription	Esophagus	oesophagus
5	chr8:107738800-107757000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr8:107739000-107758000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr8:107739000-107775200	Weak transcription	A549	lung
8	chr8:107739200-107760800	Weak transcription	Fetal Stomach	stomach
9	chr8:107740000-107759600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr8:107740000-107775200	Weak transcription	Ovary	ovary
11	chr8:107740200-107767400	Weak transcription	K562	blood
12	chr8:107740200-107783800	Weak transcription	Fetal Brain Male	brain
13	chr8:107740800-107775200	Weak transcription	Brain Substantia Nigra	brain
14	chr8:107741000-107768200	Weak transcription	Brain Germinal Matrix	brain
15	chr8:107747000-107757800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr8:107747000-107768000	Weak transcription	Small Intestine	intestine
17	chr8:107747600-107757200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr8:107748600-107760400	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr8:107749000-107761200	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr8:107749200-107765000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr8:107749400-107775200	Weak transcription	HMEC	breast
22	chr8:107749800-107760800	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr8:107750600-107758600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr8:107751000-107764800	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr8:107751400-107757000	Strong transcription	Duodenum Mucosa	Duodenum
26	chr8:107751400-107757200	Strong transcription	Rectal Mucosa Donor 29	rectum
27	chr8:107751400-107757400	Strong transcription	Primary neutrophils fromperipheralblood	blood
28	chr8:107751400-107758000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr8:107751600-107757000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr8:107751600-107757000	Strong transcription	Placenta	Placenta
31	chr8:107751600-107757400	Strong transcription	Adipose Nuclei	Adipose
32	chr8:107751600-107757800	Strong transcription	Primary B cells from peripheral blood	blood
33	chr8:107751600-107757800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr8:107751600-107761000	Strong transcription	Primary B cells from cord blood	blood
35	chr8:107751600-107763000	Weak transcription	HSMMtube	muscle
36	chr8:107751800-107757000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr8:107751800-107757200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr8:107752600-107757000	Strong transcription	Fetal Thymus	thymus
39	chr8:107752800-107757400	Strong transcription	HUES64 Cell Line	embryonic stem cell
40	chr8:107753000-107762800	Weak transcription	Aorta	Aorta
41	chr8:107753200-107771400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr8:107753400-107757000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr8:107753600-107757600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr8:107753600-107763600	Weak transcription	Colon Smooth Muscle	Colon
45	chr8:107753600-107777400	Weak transcription	HUVEC	blood vessel
46	chr8:107753800-107756800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
47	chr8:107753800-107757000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
48	chr8:107753800-107758000	Weak transcription	NHEK	skin
49	chr8:107753800-107775200	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr8:107754000-107756800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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