Variant report

Variant	rs2038150
Chromosome Location	chr6:56045043-56045044
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 106 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs1022539	0.92[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs11970688	0.86[AFR][1000 genomes]
rs12190324	0.90[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs12199712	0.88[CEU][hapmap];0.89[EUR][1000 genomes]
rs12199742	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs1319111	0.88[CEU][hapmap];0.89[EUR][1000 genomes]
rs13193925	0.96[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13209836	1.00[CEU][hapmap];0.87[YRI][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1320996	0.83[AFR][1000 genomes]
rs1474698	0.93[YRI][hapmap];0.92[AFR][1000 genomes]
rs1925139	0.98[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs1925143	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs1925144	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1925148	0.83[AFR][1000 genomes]
rs1925149	0.84[EUR][1000 genomes]
rs1925153	0.81[YRI][hapmap]
rs1925174	0.89[YRI][hapmap]
rs1925175	0.85[YRI][hapmap]
rs1925185	0.96[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1925189	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs1980487	0.92[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs1998700	0.92[YRI][hapmap];0.83[AFR][1000 genomes]
rs2038149	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2223598	0.83[YRI][hapmap]
rs2328675	0.94[EUR][1000 genomes]
rs2397208	0.91[CEU][hapmap];0.90[EUR][1000 genomes]
rs2876630	0.94[EUR][1000 genomes]
rs3846922	0.92[CEU][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs3846923	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs3846924	0.92[CEU][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs3846925	0.91[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs3846926	0.83[AFR][1000 genomes]
rs3857612	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs3899394	0.92[AFR][1000 genomes]
rs4119567	0.92[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs4126555	0.90[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs4126556	0.90[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs4126557	0.90[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs4126558	0.92[CEU][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs4140573	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs4140575	0.83[AFR][1000 genomes]
rs4310058	0.82[YRI][hapmap];0.82[AFR][1000 genomes]
rs4490668	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs4495274	0.92[CEU][hapmap];0.94[EUR][1000 genomes]
rs4554321	0.91[EUR][1000 genomes]
rs4607420	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4712113	0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4712116	0.90[AFR][1000 genomes]
rs4715583	0.93[YRI][hapmap];0.88[AFR][1000 genomes]
rs4715584	0.93[YRI][hapmap];0.88[AFR][1000 genomes]
rs4715585	1.00[CEU][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4715588	0.93[EUR][1000 genomes]
rs4715589	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs4715593	0.92[EUR][1000 genomes]
rs4715596	0.83[AFR][1000 genomes]
rs6459128	0.96[CEU][hapmap];0.94[EUR][1000 genomes]
rs6459129	0.93[EUR][1000 genomes]
rs6459130	0.92[AFR][1000 genomes]
rs6459133	0.92[CEU][hapmap];0.94[EUR][1000 genomes]
rs6459134	0.98[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs6459136	0.92[CEU][hapmap];0.93[EUR][1000 genomes]
rs6904431	0.90[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs6904899	0.92[EUR][1000 genomes]
rs6908195	0.91[EUR][1000 genomes]
rs6911907	0.94[EUR][1000 genomes]
rs6914495	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs6914892	0.93[EUR][1000 genomes]
rs6917593	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6920461	0.93[YRI][hapmap];0.83[AFR][1000 genomes]
rs6922057	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6927421	0.84[AFR][1000 genomes]
rs6933151	1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6934945	0.89[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6935152	0.93[EUR][1000 genomes]
rs6935200	0.93[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs6936386	0.92[AFR][1000 genomes]
rs6939465	0.83[CEU][hapmap];0.86[EUR][1000 genomes]
rs7450147	0.91[EUR][1000 genomes]
rs764517	0.84[AFR][1000 genomes]
rs7741903	0.83[YRI][hapmap];0.82[AFR][1000 genomes]
rs7754787	0.90[EUR][1000 genomes]
rs7762422	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs7776118	0.83[AFR][1000 genomes]
rs9296830	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs9296832	0.83[YRI][hapmap];0.83[AFR][1000 genomes]
rs9296833	0.83[YRI][hapmap];0.82[AFR][1000 genomes]
rs9349804	0.83[YRI][hapmap];0.83[AFR][1000 genomes]
rs9357892	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9357893	0.92[YRI][hapmap];0.83[AFR][1000 genomes]
rs9357894	0.90[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs9357897	0.81[AFR][1000 genomes]
rs9370485	0.92[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9370486	1.00[CEU][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9382592	0.86[EUR][1000 genomes]
rs9382595	0.92[CEU][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs9396176	0.87[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9396181	0.93[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs9396183	0.83[AFR][1000 genomes]
rs9464348	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9475583	0.93[YRI][hapmap];0.84[AFR][1000 genomes]
rs9475586	0.84[AFR][1000 genomes]
rs9475593	1.00[CEU][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9475621	0.92[CEU][hapmap];0.93[EUR][1000 genomes]
rs9475641	0.82[YRI][hapmap];0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56021800-56053200	Weak transcription	Aorta	Aorta
2	chr6:56040800-56045800	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr6:56041000-56046000	Weak transcription	Fetal Muscle Leg	muscle
4	chr6:56041000-56047400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr6:56042000-56046200	Weak transcription	Fetal Kidney	kidney
6	chr6:56043200-56046200	Weak transcription	NHDF-Ad	bronchial
7	chr6:56044000-56045800	Weak transcription	Stomach Smooth Muscle	stomach
8	chr6:56044000-56052400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr6:56044800-56055600	Weak transcription	Fetal Lung	lung

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