Variant report

Variant	rs2042966
Chromosome Location	chr5:97844976-97844977
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10038701	0.87[EUR][1000 genomes]
rs1156555	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11952745	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13154568	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1345571	0.87[EUR][1000 genomes]
rs1363584	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1363585	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1421632	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1422720	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1422722	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1422723	0.88[EUR][1000 genomes]
rs152954	0.81[EUR][1000 genomes]
rs152955	0.83[EUR][1000 genomes]
rs1559132	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1560179	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1592734	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs181854	0.82[EUR][1000 genomes]
rs1820766	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2052447	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2431067	0.82[EUR][1000 genomes]
rs251481	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs251482	0.82[EUR][1000 genomes]
rs27031	0.80[CEU][hapmap]
rs3860804	0.86[CEU][hapmap];0.84[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs457020	0.82[EUR][1000 genomes]
rs4601066	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs460723	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs463369	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs466058	0.82[EUR][1000 genomes]
rs466259	0.82[EUR][1000 genomes]
rs467853	0.81[EUR][1000 genomes]
rs468674	0.80[CEU][hapmap]
rs469328	0.82[EUR][1000 genomes]
rs4703113	0.87[EUR][1000 genomes]
rs4703114	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4703120	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs651434	0.82[EUR][1000 genomes]
rs6867574	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6870691	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6881724	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6893541	0.87[CEU][hapmap];0.82[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs765576	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs765577	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7719420	0.88[EUR][1000 genomes]
rs7724726	0.88[EUR][1000 genomes]
rs929739	0.87[EUR][1000 genomes]
rs9327251	0.96[EUR][1000 genomes]
rs985151	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018555	chr5:97719032-97873906	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv882412	chr5:97796120-97953719	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97839200-97845400	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr5:97839600-97845000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr5:97839800-97845000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr5:97839800-97845000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr5:97839800-97845800	Weak transcription	Pancreas	Pancrea
6	chr5:97840200-97845200	Weak transcription	Duodenum Mucosa	Duodenum
7	chr5:97841000-97845000	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr5:97841000-97845000	Weak transcription	Stomach Mucosa	stomach
9	chr5:97844200-97845400	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr5:97844200-97845600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr5:97844200-97847200	Enhancers	Fetal Intestine Large	intestine
12	chr5:97844400-97847200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr5:97844400-97850400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:97844600-97845000	Weak transcription	Fetal Intestine Small	intestine
15	chr5:97844600-97845600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr5:97844600-97846800	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr5:97844800-97846400	Enhancers	Fetal Muscle Leg	muscle

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