Variant report

Variant	rs2047372
Chromosome Location	chrX:31662951-31662952
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1039159	0.93[CEU][hapmap];0.82[CHD][hapmap];0.96[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap]
rs1391112	1.00[CHB][hapmap];0.97[CHD][hapmap];0.88[JPT][hapmap]
rs1391113	1.00[CHB][hapmap];0.97[CHD][hapmap];0.88[JPT][hapmap]
rs1497438	0.88[CHB][hapmap];0.87[CHD][hapmap];0.81[JPT][hapmap]
rs1497444	0.86[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap]
rs1497447	0.86[CEU][hapmap];0.84[GIH][hapmap]
rs1540705	0.88[CHB][hapmap];0.88[CHD][hapmap];0.87[JPT][hapmap]
rs1801188	0.82[CHD][hapmap]
rs1921961	0.92[GIH][hapmap];0.94[MEX][hapmap];0.86[TSI][hapmap]
rs2030002	0.86[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];0.87[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap]
rs2173221	0.93[CEU][hapmap];0.94[CHB][hapmap];0.87[JPT][hapmap]
rs2404957	0.94[CHB][hapmap];0.88[JPT][hapmap]
rs35523157	0.92[GIH][hapmap]
rs4829110	0.93[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.85[GIH][hapmap];0.87[JPT][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap]
rs4829111	0.86[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap]
rs4829227	0.89[MEX][hapmap]
rs4829228	0.93[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap]
rs4829229	0.87[CHB][hapmap];0.94[CHD][hapmap]
rs4829232	0.94[CHB][hapmap];0.81[JPT][hapmap]
rs5927027	0.93[CEU][hapmap];0.94[CHB][hapmap];0.87[JPT][hapmap]
rs5927028	1.00[CHB][hapmap];0.87[JPT][hapmap]
rs5927036	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs5927788	0.86[CEU][hapmap];0.96[GIH][hapmap]
rs5927793	0.81[CHD][hapmap]
rs5927794	0.86[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap]
rs5927802	0.86[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap]
rs5927810	0.81[JPT][hapmap]
rs5927813	0.94[CHB][hapmap];0.94[CHD][hapmap];0.94[JPT][hapmap]
rs5927816	0.94[CHB][hapmap];0.87[JPT][hapmap]
rs5971587	0.86[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap]
rs5971588	0.86[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.82[GIH][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap]
rs5972425	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs5972437	0.94[CHB][hapmap];0.91[CHD][hapmap];0.87[JPT][hapmap]
rs5972438	0.87[CHB][hapmap]
rs6527110	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs6631341	0.92[GIH][hapmap];0.83[MEX][hapmap]
rs716354	0.96[GIH][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869389	chrX:31207964-31963300	Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv481964	chrX:31270220-31672751	Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv531098	chrX:31462522-31824884	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv481719	chrX:31470100-31807209	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv481814	chrX:31566314-32058570	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv481764	chrX:31587315-31944285	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv481778	chrX:31604303-31983342	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
8	nsv520230	chrX:31611075-31919659	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
9	nsv481755	chrX:31616904-31927606	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
10	nsv481902	chrX:31619444-32462711	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
11	nsv817363	chrX:31631154-31864893	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
12	nsv481760	chrX:31637622-31934461	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
13	nsv481827	chrX:31645914-32083900	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
14	nsv481716	chrX:31649484-31789177	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
15	nsv531768	chrX:31650185-31972259	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
16	nsv481844	chrX:31651170-32212746	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
17	nsv481763	chrX:31653788-31943470	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
18	nsv932695	chrX:31658889-31683682	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
19	nsv817576	chrX:31658889-31990023	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links