Variant report

Variant	rs2047667
Chromosome Location	chr15:53338761-53338762
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12594246	0.90[ASN][1000 genomes]
rs1392858	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1508045	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17659077	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17659107	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2047668	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2414224	0.83[ASN][1000 genomes]
rs2414227	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4142454	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7174447	0.89[ASN][1000 genomes]
rs73402033	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73402040	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73402043	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73402051	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73402072	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8027120	0.90[ASN][1000 genomes]
rs8027138	0.90[ASN][1000 genomes]
rs8042629	0.97[ASN][1000 genomes]
rs958059	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833007	chr15:53264564-53453525	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv904221	chr15:53279378-53434365	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3343986	chr15:53284440-53571936	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv904222	chr15:53316487-53384700	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1037630	chr15:53324645-53708925	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53337800-53339200	Enhancers	Liver	Liver
2	chr15:53338200-53338800	Enhancers	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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