Variant report

Variant	rs2049468
Chromosome Location	chr7:147452456-147452457
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10085579	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10229178	0.81[AFR][1000 genomes]
rs10265547	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10265558	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1467331	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2049469	0.84[AFR][1000 genomes]
rs2140812	0.93[EUR][1000 genomes]
rs4142924	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4725746	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs724440	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7785603	0.96[ASN][1000 genomes]
rs851651	0.94[ASN][1000 genomes]
rs851652	0.94[ASN][1000 genomes]
rs851654	0.90[AFR][1000 genomes]
rs851655	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs851656	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933973	chr7:147438206-147549993	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147451000-147452800	Weak transcription	Brain Hippocampus Middle	brain
2	chr7:147451800-147453600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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