Variant report

Variant	rs2051274
Chromosome Location	chr8:103164438-103164439
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:103163531..103166147-chr8:103166177..103168064,2	MCF-7	breast:
2	chr8:103155590..103157881-chr8:103163229..103165862,3	K562	blood:

Variant related genes	Relation type
ENSG00000254492	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10093024	0.86[CHB][hapmap];0.84[MEX][hapmap];0.86[ASN][1000 genomes]
rs10955282	0.83[ASN][1000 genomes]
rs1111911	0.86[CHB][hapmap];0.82[CHD][hapmap];0.87[ASN][1000 genomes]
rs1111912	0.82[CEU][hapmap];0.80[CHD][hapmap];0.81[JPT][hapmap]
rs1265119	0.83[ASN][1000 genomes]
rs12681035	0.86[ASN][1000 genomes]
rs13268773	0.86[CHB][hapmap];0.86[ASN][1000 genomes]
rs1547370	0.87[ASN][1000 genomes]
rs1892965	0.86[CHB][hapmap];0.86[ASN][1000 genomes]
rs2105615	0.86[CHB][hapmap]
rs2387095	0.87[ASN][1000 genomes]
rs4291239	0.86[CHB][hapmap];0.84[MEX][hapmap];0.87[ASN][1000 genomes]
rs4734053	0.90[CHB][hapmap];0.86[ASN][1000 genomes]
rs4734616	0.86[ASN][1000 genomes]
rs62524263	0.85[ASN][1000 genomes]
rs6468817	0.87[ASN][1000 genomes]
rs6468818	0.86[CHB][hapmap];0.87[ASN][1000 genomes]
rs6980613	0.86[CHB][hapmap];0.83[CHD][hapmap];0.84[MEX][hapmap];0.87[ASN][1000 genomes]
rs6982041	0.83[ASN][1000 genomes]
rs6992948	0.99[ASN][1000 genomes]
rs7000087	0.86[ASN][1000 genomes]
rs7000803	0.96[CEU][hapmap];0.86[CHB][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7819114	0.86[ASN][1000 genomes]
rs7826028	0.86[CHB][hapmap];0.86[ASN][1000 genomes]
rs9297318	0.81[CEU][hapmap]
rs9942800	0.87[ASN][1000 genomes]
rs9942805	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754264	chr8:103070824-103170824	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1020359	chr8:103109921-103318415	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv1033829	chr8:103110057-103525696	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv1021459	chr8:103163436-103401754	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	nsv539701	chr8:103163436-103401754	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103163400-103165000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:103163600-103165200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links