Variant report

Variant	rs2053514
Chromosome Location	chr14:85740426-85740427
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10134214	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10220585	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10498582	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11847747	0.81[EUR][1000 genomes]
rs12050312	1.00[CEU][hapmap];0.85[JPT][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12435232	0.84[EUR][1000 genomes]
rs12435574	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12879855	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1375575	0.91[AFR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1530325	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17796669	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1839313	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1867082	0.85[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap]
rs2029135	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2372881	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2372886	0.91[AFR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2888433	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34155469	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34662815	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35048084	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4904242	0.90[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs7151509	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7160419	0.85[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs8011992	0.91[AFR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8012486	0.97[ASN][1000 genomes]
rs8022384	0.84[EUR][1000 genomes]
rs8022603	0.84[EUR][1000 genomes]
rs895909	0.92[EUR][1000 genomes]
rs961166	0.91[AFR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422273	chr14:85703149-85767292	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:85739000-85740800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr14:85740000-85740600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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