Variant report

Variant	rs2058506
Chromosome Location	chr7:147519767-147519768
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10488352	0.82[CEU][hapmap]
rs10488353	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1074211	1.00[CEU][hapmap]
rs12530803	0.82[CEU][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs12531773	0.82[CEU][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs12532478	0.82[CEU][hapmap]
rs12535052	0.82[CEU][hapmap];1.00[MKK][hapmap]
rs12539579	0.82[CEU][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs16883720	1.00[ASW][hapmap]
rs17170691	1.00[ASW][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap]
rs17170714	1.00[ASW][hapmap]
rs17170742	1.00[TSI][hapmap]
rs17824795	0.82[CEU][hapmap];1.00[TSI][hapmap]
rs17825333	0.82[CEU][hapmap]
rs17825749	0.82[CEU][hapmap]
rs17825832	0.82[CEU][hapmap]
rs17825924	0.82[CEU][hapmap]
rs992368	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933973	chr7:147438206-147549993	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
2	nsv889397	chr7:147471710-147585819	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
3	nsv465193	chr7:147512619-147583680	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
4	nsv608965	chr7:147512619-147583680	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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