Variant report

Variant	rs2061087
Chromosome Location	chr14:69842660-69842661
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69841947..69843933-chr14:69852342..69854266,2	MCF-7	breast:
2	chr14:69841356..69843635-chr14:69843836..69846318,2	K562	blood:
3	chr14:69834457..69836260-chr14:69841920..69844753,2	K562	blood:
4	chr14:69833439..69838748-chr14:69841652..69843857,5	K562	blood:
5	chr14:69841672..69843783-chr14:69865247..69866834,2	MCF-7	breast:
6	chr14:69841304..69844140-chr14:69845246..69848193,3	K562	blood:

Variant related genes	Relation type
ENSG00000029364	Chromatin interaction
ENSG00000100632	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10131686	0.84[EUR][1000 genomes]
rs10137655	0.82[MEX][hapmap];0.81[TSI][hapmap];0.84[EUR][1000 genomes]
rs10137668	0.82[MEX][hapmap];0.81[TSI][hapmap];0.84[EUR][1000 genomes]
rs11158808	0.84[CEU][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12147167	0.84[EUR][1000 genomes]
rs12147518	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12147983	0.84[EUR][1000 genomes]
rs12147999	0.84[EUR][1000 genomes]
rs12385913	0.82[MEX][hapmap]
rs28791926	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4899297	1.00[ASW][hapmap];1.00[CHB][hapmap]
rs55708330	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55751520	0.84[EUR][1000 genomes]
rs59116152	0.84[EUR][1000 genomes]
rs59181716	0.84[EUR][1000 genomes]
rs60238702	0.84[EUR][1000 genomes]
rs61436917	0.84[EUR][1000 genomes]
rs61564515	0.84[EUR][1000 genomes]
rs7152301	0.82[MEX][hapmap]
rs72723857	0.84[EUR][1000 genomes]
rs74061833	0.83[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2061087	ADAM21	cis	parietal	SCAN
rs2061087	RAD51L1	cis	cerebellum	SCAN
rs2061087	GALNTL1	cis	cerebellum	SCAN

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69818600-69842800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr14:69821800-69852400	Weak transcription	Spleen	Spleen
3	chr14:69824200-69864000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr14:69828000-69843000	Weak transcription	GM12878-XiMat	blood
5	chr14:69830000-69847200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr14:69830200-69843000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr14:69831200-69842800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr14:69831200-69852400	Weak transcription	Brain Substantia Nigra	brain
9	chr14:69831400-69843200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr14:69831600-69843000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr14:69833200-69845600	Weak transcription	Fetal Stomach	stomach
12	chr14:69834200-69842800	Weak transcription	Lung	lung
13	chr14:69835400-69851800	Weak transcription	Psoas Muscle	Psoas
14	chr14:69835600-69851600	Weak transcription	Pancreas	Pancrea
15	chr14:69835800-69843400	Weak transcription	Brain Angular Gyrus	brain
16	chr14:69835800-69852400	Weak transcription	Small Intestine	intestine
17	chr14:69836800-69843200	Weak transcription	Right Ventricle	heart
18	chr14:69836800-69851600	Weak transcription	Gastric	stomach
19	chr14:69837000-69845800	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr14:69837200-69842800	Weak transcription	Fetal Thymus	thymus
21	chr14:69837200-69843200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr14:69837200-69860000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr14:69837400-69842800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr14:69837400-69842800	Weak transcription	Ovary	ovary
25	chr14:69837400-69851000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr14:69837600-69843200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr14:69838000-69846200	Weak transcription	Esophagus	oesophagus
28	chr14:69839000-69843000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr14:69839200-69852200	Weak transcription	Aorta	Aorta
30	chr14:69839800-69842800	Weak transcription	Rectal Smooth Muscle	rectum
31	chr14:69839800-69851600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr14:69840000-69845000	Weak transcription	K562	blood
33	chr14:69840200-69842800	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr14:69840200-69843200	Weak transcription	NHLF	lung
35	chr14:69840600-69842800	Weak transcription	Colon Smooth Muscle	Colon
36	chr14:69840600-69843200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr14:69840800-69851600	Weak transcription	Colonic Mucosa	Colon
38	chr14:69840800-69852400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr14:69841000-69842800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr14:69841000-69843400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr14:69841000-69843800	Strong transcription	Skeletal Muscle Female	skeletal muscle
42	chr14:69841000-69844200	Strong transcription	Fetal Brain Female	brain
43	chr14:69841000-69845200	Strong transcription	Liver	Liver
44	chr14:69841000-69863400	Strong transcription	A549	lung
45	chr14:69841200-69843000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr14:69841200-69843000	Weak transcription	Hela-S3	cervix
47	chr14:69841200-69843000	Strong transcription	HMEC	breast
48	chr14:69841200-69843400	Strong transcription	Dnd41	blood
49	chr14:69841200-69843800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr14:69841200-69844400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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