Variant report

Variant	rs2066291
Chromosome Location	chr9:15834298-15834299
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10962193	1.00[CHB][hapmap]
rs10962194	1.00[CHB][hapmap]
rs11999303	1.00[CHB][hapmap]
rs12000772	1.00[CHB][hapmap];0.95[ASN][1000 genomes]
rs12005062	1.00[CHB][hapmap]
rs12682932	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12683523	0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12683980	0.88[CHB][hapmap];1.00[YRI][hapmap]
rs12684485	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12684785	0.85[CHB][hapmap];0.81[AFR][1000 genomes]
rs12684808	0.86[CHB][hapmap]
rs12685476	0.86[CHB][hapmap];0.90[YRI][hapmap]
rs12686591	0.88[CHB][hapmap];0.89[YRI][hapmap]
rs1361607	0.80[ASN][1000 genomes]
rs1396705	0.86[CHB][hapmap]
rs1536685	0.86[CHB][hapmap]
rs1578558	1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs1582200	0.80[ASN][1000 genomes]
rs16933544	0.85[CHB][hapmap]
rs16933593	0.83[YRI][hapmap]
rs16933603	0.83[YRI][hapmap]
rs16933626	1.00[YRI][hapmap]
rs16933805	0.86[CHB][hapmap]
rs16933814	0.86[CHB][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes]
rs34816651	0.87[AFR][1000 genomes]
rs57592105	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59779354	0.88[ASN][1000 genomes]
rs60572069	0.82[AFR][1000 genomes]
rs6474950	0.82[AFR][1000 genomes]
rs6474968	0.85[AFR][1000 genomes]
rs7025415	0.83[YRI][hapmap]
rs7026090	1.00[CHB][hapmap]
rs7026629	0.87[AFR][1000 genomes]
rs7028328	0.84[ASN][1000 genomes]
rs7029375	1.00[CHB][hapmap]
rs7029410	1.00[CHB][hapmap]
rs7032595	0.85[CHB][hapmap]
rs7035048	0.86[CHB][hapmap];0.83[YRI][hapmap];0.87[AFR][1000 genomes]
rs7039881	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7040071	1.00[CHB][hapmap]
rs7040580	1.00[CHB][hapmap]
rs7040928	0.81[AFR][1000 genomes]
rs7044984	0.86[CHB][hapmap];0.90[YRI][hapmap];0.88[AFR][1000 genomes]
rs7048479	0.88[CHB][hapmap];0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73416209	0.85[AFR][1000 genomes]
rs73416233	0.87[AFR][1000 genomes]
rs73416254	0.87[AFR][1000 genomes]
rs73416267	0.85[AFR][1000 genomes]
rs73416285	0.87[AFR][1000 genomes]
rs73422714	0.85[ASN][1000 genomes]
rs73422737	0.88[ASN][1000 genomes]
rs7388793	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs770192	0.84[ASN][1000 genomes]
rs770194	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs770198	1.00[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs770199	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs770200	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs770201	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs770202	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7847946	0.85[AFR][1000 genomes]
rs7852250	1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs7856304	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7856877	0.86[ASN][1000 genomes]
rs7860354	0.80[ASN][1000 genomes]
rs7861533	0.90[AFR][1000 genomes]
rs7865705	0.83[YRI][hapmap]
rs7866472	0.86[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs7866699	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs7867018	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs7867521	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7869609	1.00[CHB][hapmap];0.83[YRI][hapmap];0.84[AFR][1000 genomes]
rs7870166	0.82[YRI][hapmap];0.85[AFR][1000 genomes]
rs906798	0.87[AFR][1000 genomes]
rs9407664	0.80[ASN][1000 genomes]
rs9407668	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv892632	chr9:15590116-15869845	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv892633	chr9:15604746-15889411	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv892635	chr9:15731775-15876507	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv528964	chr9:15760822-15875162	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv892636	chr9:15794858-15876507	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv6486	chr9:15805220-15837639	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv613666	chr9:15823667-15875162	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv613667	chr9:15823667-15876507	Enhancers ZNF genes & repeats Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15827000-15834600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr9:15830200-15857200	Weak transcription	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links