Variant report

Variant	rs206700
Chromosome Location	chr6:164526945-164526946
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:164526375..164528234-chr6:164529949..164531594,2	K562	blood:

Variant related genes	Relation type
ENSG00000230627	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs169580	0.95[CEU][hapmap];0.91[CHB][hapmap];0.83[JPT][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs206699	0.97[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs206704	0.82[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs206705	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs206707	0.87[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs206708	0.95[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs206710	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1026707	chr6:164188210-164749206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv538527	chr6:164188210-164749206	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1029952	chr6:164463355-165268911	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164506400-164530200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:164519000-164528400	Weak transcription	Psoas Muscle	Psoas
3	chr6:164520200-164528600	Weak transcription	Esophagus	oesophagus
4	chr6:164520400-164529200	Weak transcription	Adipose Nuclei	Adipose
5	chr6:164523000-164527200	Weak transcription	Fetal Muscle Trunk	muscle
6	chr6:164523200-164529400	Weak transcription	Right Atrium	heart
7	chr6:164523200-164530600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:164523400-164536400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr6:164523800-164527200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr6:164523800-164527400	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr6:164524000-164527800	Weak transcription	Brain Hippocampus Middle	brain
12	chr6:164524000-164529200	Weak transcription	Brain Substantia Nigra	brain
13	chr6:164524800-164531800	Enhancers	Fetal Muscle Leg	muscle
14	chr6:164525000-164527400	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr6:164526000-164528800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr6:164526200-164527200	Flanking Active TSS	Fetal Heart	heart
17	chr6:164526200-164527400	Active TSS	Right Ventricle	heart
18	chr6:164526400-164527600	Active TSS	Left Ventricle	heart
19	chr6:164526600-164527800	Active TSS	K562	blood
20	chr6:164526800-164527600	Active TSS	Brain Anterior Caudate	brain

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