Variant report

Variant	rs206701
Chromosome Location	chr6:164528095-164528096
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:164526375..164528234-chr6:164529949..164531594,2	K562	blood:
2	chr6:163834384..163836526-chr6:164527660..164529288,2	K562	blood:
3	chr6:164527209..164529090-chr6:164549117..164551692,2	K562	blood:

Variant related genes	Relation type
ENSG00000230627	Chromatin interaction
ENSG00000270419	Chromatin interaction
ENSG00000112531	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10945953	0.82[CHB][hapmap]
rs11754236	1.00[JPT][hapmap]
rs13205991	0.92[ASN][1000 genomes]
rs206709	0.97[ASN][1000 genomes]
rs55958453	0.92[ASN][1000 genomes]
rs9456927	0.92[ASN][1000 genomes]
rs9456928	1.00[JPT][hapmap]
rs9456929	1.00[JPT][hapmap]
rs9456930	1.00[JPT][hapmap]
rs9458985	0.92[ASN][1000 genomes]
rs9458986	1.00[JPT][hapmap]
rs9458989	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1026707	chr6:164188210-164749206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv538527	chr6:164188210-164749206	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1029952	chr6:164463355-165268911	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164506400-164530200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:164519000-164528400	Weak transcription	Psoas Muscle	Psoas
3	chr6:164520200-164528600	Weak transcription	Esophagus	oesophagus
4	chr6:164520400-164529200	Weak transcription	Adipose Nuclei	Adipose
5	chr6:164523200-164529400	Weak transcription	Right Atrium	heart
6	chr6:164523200-164530600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:164523400-164536400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr6:164524000-164529200	Weak transcription	Brain Substantia Nigra	brain
9	chr6:164524800-164531800	Enhancers	Fetal Muscle Leg	muscle
10	chr6:164526000-164528800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr6:164527200-164530400	Enhancers	Fetal Muscle Trunk	muscle
12	chr6:164527200-164531600	Enhancers	Fetal Heart	heart
13	chr6:164527400-164529000	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr6:164527400-164529200	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr6:164527600-164529400	Weak transcription	Brain Anterior Caudate	brain
16	chr6:164527800-164529600	Enhancers	K562	blood
17	chr6:164528000-164528600	Enhancers	HSMMtube	muscle
18	chr6:164528000-164529000	Weak transcription	Left Ventricle	heart
19	chr6:164528000-164529400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr6:164528000-164529400	Enhancers	HSMM	muscle
21	chr6:164528000-164529600	Weak transcription	Right Ventricle	heart
22	chr6:164528000-164529800	Weak transcription	Brain Hippocampus Middle	brain
23	chr6:164528000-164537200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links