Variant report

Variant	rs206706
Chromosome Location	chr6:164531155-164531156
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr6:164530677-164531226	H1-hESC	embryonic stem cell:	n/a	chr6:164530914-164530927 chr6:164530982-164531001 chr6:164530988-164530997
2	RAD21	chr6:164530723-164531197	H1-hESC	embryonic stem cell:	n/a	chr6:164530914-164530927 chr6:164530982-164531001 chr6:164530988-164530997
3	RAD21	chr6:164530751-164531286	HCT-116	colon:	n/a	chr6:164530914-164530927 chr6:164530982-164531001 chr6:164530988-164530997
4	ZNF384	chr6:164530817-164531156	K562	blood:	n/a	n/a
5	RAD21	chr6:164530749-164531200	HepG2	liver:	n/a	chr6:164530914-164530927 chr6:164530982-164531001 chr6:164530988-164530997
6	CTCF	chr6:164530815-164531180	K562	blood:	n/a	chr6:164530985-164531001 chr6:164530979-164531000 chr6:164530984-164531002
7	CTCF	chr6:164531120-164531270	GM12864	blood:	n/a	n/a
8	CTCF	chr6:164530676-164531224	A549	lung:	n/a	chr6:164530985-164531001 chr6:164530979-164531000 chr6:164530984-164531002
9	RAD21	chr6:164530752-164531185	A549	lung:	n/a	chr6:164530914-164530927 chr6:164530982-164531001 chr6:164530988-164530997
10	CTCF	chr6:164531040-164531190	WI-38	lung:	n/a	n/a
11	CTCF	chr6:164530827-164531216	K562	blood:	n/a	chr6:164530985-164531001 chr6:164530979-164531000 chr6:164530984-164531002
12	RAD21	chr6:164530723-164531259	H1-hESC	embryonic stem cell:	n/a	chr6:164530914-164530927 chr6:164530982-164531001 chr6:164530988-164530997
13	CTCF	chr6:164530744-164531184	HepG2	liver:	n/a	chr6:164530985-164531001 chr6:164530979-164531000 chr6:164530984-164531002
14	SMC3	chr6:164530817-164531155	HepG2	liver:	n/a	chr6:164530986-164531000
15	RAD21	chr6:164530780-164531211	HCT-116	colon:	n/a	chr6:164530914-164530927 chr6:164530982-164531001 chr6:164530988-164530997
16	CTCF	chr6:164531060-164531210	HVMF	connective:	n/a	n/a
17	CTCF	chr6:164530811-164531163	GM12878	blood:	n/a	chr6:164530985-164531001 chr6:164530979-164531000 chr6:164530984-164531002
18	RAD21	chr6:164530802-164531166	ECC-1	luminal epithelium:	n/a	chr6:164530914-164530927 chr6:164530982-164531001 chr6:164530988-164530997

Variant related genes	Relation type
ENSG00000230627	TF binding region

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1436852	1.00[ASN][1000 genomes]
rs16896005	1.00[ASN][1000 genomes]
rs16896013	1.00[ASN][1000 genomes]
rs205999	1.00[ASN][1000 genomes]
rs206702	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs206703	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs206736	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs206743	1.00[ASN][1000 genomes]
rs55635944	1.00[ASN][1000 genomes]
rs55827712	1.00[ASN][1000 genomes]
rs55947109	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56076452	1.00[ASN][1000 genomes]
rs56153379	1.00[ASN][1000 genomes]
rs60840152	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1026707	chr6:164188210-164749206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv538527	chr6:164188210-164749206	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1029952	chr6:164463355-165268911	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	esv1828570	chr6:164528407-164546547	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164523400-164536400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr6:164524800-164531800	Enhancers	Fetal Muscle Leg	muscle
3	chr6:164527200-164531600	Enhancers	Fetal Heart	heart
4	chr6:164528000-164537200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:164529200-164531200	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr6:164529200-164531200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
7	chr6:164529600-164531600	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr6:164529800-164531200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr6:164529800-164531800	Enhancers	Lung	lung
10	chr6:164530000-164531200	Weak transcription	Left Ventricle	heart
11	chr6:164530600-164531200	Enhancers	Brain Angular Gyrus	brain
12	chr6:164530800-164531200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:164530800-164531400	Enhancers	Liver	Liver
14	chr6:164530800-164531600	Weak transcription	Psoas Muscle	Psoas
15	chr6:164530800-164534600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:164530800-164535600	Weak transcription	Brain Anterior Caudate	brain
17	chr6:164531000-164531200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr6:164531000-164531200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:164531000-164531400	Enhancers	Adipose Nuclei	Adipose
20	chr6:164531000-164531400	Active TSS	Skeletal Muscle Male	skeletal muscle
21	chr6:164531000-164534400	Weak transcription	Right Ventricle	heart

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