Variant report

Variant	rs206733
Chromosome Location	chr6:164503902-164503903
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs109231	0.87[ASN][1000 genomes]
rs206691	0.91[ASN][1000 genomes]
rs206693	0.94[ASN][1000 genomes]
rs206694	0.94[ASN][1000 genomes]
rs206695	0.94[ASN][1000 genomes]
rs206697	0.94[ASN][1000 genomes]
rs206723	1.00[CHB][hapmap];0.93[JPT][hapmap];0.95[ASN][1000 genomes]
rs206726	1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[ASN][1000 genomes]
rs206728	1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[ASN][1000 genomes]
rs206730	0.98[ASN][1000 genomes]
rs376791	0.90[ASN][1000 genomes]
rs393083	0.91[ASN][1000 genomes]
rs395843	0.91[ASN][1000 genomes]
rs402407	0.91[ASN][1000 genomes]
rs406530	0.91[ASN][1000 genomes]
rs425618	0.92[ASN][1000 genomes]
rs444865	0.92[ASN][1000 genomes]
rs448879	0.90[ASN][1000 genomes]
rs4509096	0.91[ASN][1000 genomes]
rs4709822	0.96[ASN][1000 genomes]
rs590305	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1026707	chr6:164188210-164749206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv538527	chr6:164188210-164749206	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1029952	chr6:164463355-165268911	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164492600-164504800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:164499200-164505200	Weak transcription	Right Ventricle	heart
3	chr6:164499400-164505400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr6:164499600-164506000	Weak transcription	HSMMtube	muscle
5	chr6:164500000-164505200	Weak transcription	Brain Anterior Caudate	brain
6	chr6:164500400-164505200	Weak transcription	Right Atrium	heart
7	chr6:164501400-164506800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:164501800-164505000	Weak transcription	Spleen	Spleen
9	chr6:164502400-164505000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr6:164502400-164505200	Weak transcription	Fetal Heart	heart
11	chr6:164502600-164506200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:164503200-164505200	Weak transcription	Fetal Muscle Leg	muscle
13	chr6:164503400-164504800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr6:164503400-164504800	Weak transcription	Fetal Muscle Trunk	muscle
15	chr6:164503400-164505000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr6:164503400-164505600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr6:164503400-164506000	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr6:164503800-164504000	Enhancers	Brain Germinal Matrix	brain
19	chr6:164503800-164505600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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