Variant report

Variant	rs206811
Chromosome Location	chr2:31636915-31636916
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:31636673..31637179-chr2:31748776..31749495,2	MCF-7	breast:
2	chr2:31636539..31637492-chr2:31657533..31658134,3	MCF-7	breast:
3	chr2:31636647..31637404-chr2:31748707..31749593,5	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1033688	0.83[EUR][1000 genomes]
rs1033690	0.84[EUR][1000 genomes]
rs11124260	0.83[EUR][1000 genomes]
rs11526116	0.83[EUR][1000 genomes]
rs12479415	0.83[EUR][1000 genomes]
rs17545406	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17604588	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1978638	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs206806	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs206808	0.87[ASN][1000 genomes]
rs206812	0.95[CHB][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs206816	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs206827	0.85[ASN][1000 genomes]
rs206847	0.83[CHD][hapmap];0.80[GIH][hapmap]
rs206858	0.82[CHB][hapmap]
rs206859	0.82[CHB][hapmap];0.83[CHD][hapmap];0.83[MEX][hapmap]
rs58967340	0.83[EUR][1000 genomes]
rs62141223	0.83[EUR][1000 genomes]
rs7575607	0.87[CEU][hapmap];0.92[MEX][hapmap];0.85[TSI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949028	chr2:31502801-31665108	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv532648	chr2:31591498-32312698	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
3	nsv456030	chr2:31598823-31820256	Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv456041	chr2:31598823-31820256	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv581269	chr2:31598823-31820256	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv998853	chr2:31601455-31858961	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1005565	chr2:31603134-31868877	Genic enhancers Active TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1007179	chr2:31616112-31835410	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv1005032	chr2:31616112-31867450	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv1013891	chr2:31629179-31854283	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv535612	chr2:31629179-31854283	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs206811	SLC30A6	cis	cerebellum	SCAN

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:31598400-31639000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr2:31634400-31638000	Active TSS	Fetal Intestine Large	intestine
3	chr2:31634600-31637200	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr2:31634600-31637800	Active TSS	Duodenum Mucosa	Duodenum
5	chr2:31634600-31637800	Active TSS	Fetal Intestine Small	intestine
6	chr2:31634600-31639200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr2:31635000-31637200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr2:31635600-31638200	Flanking Active TSS	NHEK	skin
9	chr2:31636200-31638200	Flanking Active TSS	HMEC	breast
10	chr2:31636200-31638800	Enhancers	NHDF-Ad	bronchial
11	chr2:31636400-31637000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr2:31636400-31637000	Weak transcription	Hela-S3	cervix
13	chr2:31636400-31637400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr2:31636400-31637600	Weak transcription	NHLF	lung
15	chr2:31636600-31637000	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr2:31636600-31637200	Active TSS	Rectal Mucosa Donor 29	rectum
17	chr2:31636600-31637200	Enhancers	Stomach Mucosa	stomach
18	chr2:31636600-31637600	Active TSS	Colonic Mucosa	Colon
19	chr2:31636600-31637800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr2:31636600-31638000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr2:31636600-31638200	Enhancers	Placenta	Placenta
22	chr2:31636800-31637000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr2:31636800-31637200	Active TSS	Rectal Mucosa Donor 31	rectum
24	chr2:31636800-31637400	Active TSS	Liver	Liver
25	chr2:31636800-31637600	Enhancers	A549	lung

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