Variant report

Variant	rs2068898
Chromosome Location	chr1:210796064-210796065
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12097792	0.92[TSI][hapmap]
rs4951497	0.92[TSI][hapmap]
rs4951675	0.87[TSI][hapmap];0.89[EUR][1000 genomes]
rs4951688	0.86[EUR][1000 genomes]
rs6658987	0.82[CEU][hapmap];0.92[TSI][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv522480	chr1:210779936-210848344	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	diseases
3	esv1825229	chr1:210789477-210854976	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2068898	FAIM3	cis	cerebellum	SCAN

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210790400-210801800	Weak transcription	Pancreas	Pancrea
2	chr1:210790600-210796800	Weak transcription	Ovary	ovary
3	chr1:210790600-210807000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:210793800-210797800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr1:210794800-210796200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr1:210795000-210801400	Weak transcription	Aorta	Aorta
7	chr1:210795200-210797400	Weak transcription	Brain Hippocampus Middle	brain
8	chr1:210795200-210798200	Weak transcription	Brain Anterior Caudate	brain
9	chr1:210795200-210799200	Strong transcription	HSMMtube	muscle
10	chr1:210795400-210797800	Weak transcription	Brain Angular Gyrus	brain
11	chr1:210795400-210797800	Weak transcription	Brain Substantia Nigra	brain
12	chr1:210795400-210822600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr1:210795600-210796200	Enhancers	Fetal Heart	heart
14	chr1:210795800-210797400	Weak transcription	HSMM	muscle
15	chr1:210795800-210797600	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr1:210795800-210797800	Weak transcription	Brain Cingulate Gyrus	brain
17	chr1:210795800-210806600	Weak transcription	Primary hematopoietic stem cells	blood
18	chr1:210796000-210796200	Enhancers	Left Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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