Variant report

Variant	rs2071939
Chromosome Location	chr6:166952548-166952549
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11755127	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3799665	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886941	chr6:166907173-166996991	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv605259	chr6:166936021-166952981	Weak transcription Flanking Active TSS Genic enhancers Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166901000-166954800	Weak transcription	Rectal Smooth Muscle	rectum
2	chr6:166902200-166954400	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr6:166902600-166952800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr6:166916200-166954200	Weak transcription	Right Atrium	heart
5	chr6:166923800-166953000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr6:166929600-166954000	Weak transcription	HSMM	muscle
7	chr6:166929600-166955600	Weak transcription	HMEC	breast
8	chr6:166930400-166954200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:166930400-166957800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:166932600-166953800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr6:166933200-166953200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr6:166933800-166953400	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr6:166935400-166966400	Weak transcription	NH-A	brain
14	chr6:166938200-166955800	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr6:166940800-166953000	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr6:166941000-166954600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr6:166941400-166954600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:166941400-166955600	Weak transcription	Colon Smooth Muscle	Colon
19	chr6:166941800-166954800	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr6:166942400-166954200	Weak transcription	NHEK	skin
21	chr6:166942800-166952800	Strong transcription	Muscle Satellite Cultured Cells	--
22	chr6:166942800-166953200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr6:166943000-166953000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr6:166943400-166952800	Strong transcription	Fetal Stomach	stomach
25	chr6:166943400-166953600	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr6:166943600-166953400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr6:166944200-166954800	Weak transcription	Stomach Mucosa	stomach
28	chr6:166944400-166954800	Weak transcription	Colonic Mucosa	Colon
29	chr6:166944600-166952800	Weak transcription	Fetal Lung	lung
30	chr6:166944600-166953000	Weak transcription	Fetal Brain Female	brain
31	chr6:166944600-166955600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr6:166944600-166957200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr6:166944600-166958600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr6:166944800-166953000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr6:166944800-166954200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr6:166945400-166954200	Weak transcription	HSMMtube	muscle
37	chr6:166947200-166954600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr6:166947200-166955000	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr6:166947400-166969400	Weak transcription	Aorta	Aorta
40	chr6:166947800-166952800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr6:166948600-166954600	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr6:166948800-166952800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr6:166949400-166954000	Weak transcription	Primary B cells from cord blood	blood
44	chr6:166949600-166954600	Weak transcription	Spleen	Spleen
45	chr6:166949600-166954800	Weak transcription	Pancreas	Pancrea
46	chr6:166949800-166952800	Weak transcription	Liver	Liver
47	chr6:166949800-166953200	Weak transcription	Brain Substantia Nigra	brain
48	chr6:166949800-166954200	Weak transcription	Esophagus	oesophagus
49	chr6:166949800-166954600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr6:166949800-166955800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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