Variant report
| Variant | rs2073863 |
|---|---|
| Chromosome Location | chr7:126249798-126249799 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | 7:126247106-126252532..7:126890676-126899918 | H1-hESC | embryonic stem cell: | embryo |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000179603 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs1008905 | 0.84[CHB][hapmap] |
| rs11760596 | 0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs12538632 | 0.85[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs12671690 | 0.93[ASN][1000 genomes] |
| rs12706737 | 0.93[ASN][1000 genomes] |
| rs12706739 | 0.92[CHB][hapmap];1.00[JPT][hapmap] |
| rs13227344 | 0.92[ASN][1000 genomes] |
| rs13234319 | 0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs13241597 | 0.93[ASN][1000 genomes] |
| rs13241983 | 0.85[CHB][hapmap];0.90[JPT][hapmap] |
| rs13243112 | 0.80[ASN][1000 genomes] |
| rs1419482 | 0.92[CHB][hapmap];1.00[JPT][hapmap] |
| rs1419483 | 0.82[CHB][hapmap];1.00[JPT][hapmap] |
| rs1579214 | 0.84[CHB][hapmap];0.80[JPT][hapmap] |
| rs1815973 | 0.84[CHB][hapmap] |
| rs1833071 | 0.93[ASN][1000 genomes] |
| rs2283069 | 0.84[CHB][hapmap] |
| rs2283073 | 1.00[CEU][hapmap] |
| rs2299460 | 0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs2299492 | 0.80[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs34261190 | 0.80[ASN][1000 genomes] |
| rs36198401 | 0.93[ASN][1000 genomes] |
| rs3808152 | 0.88[JPT][hapmap] |
| rs3808153 | 0.81[JPT][hapmap] |
| rs4731317 | 0.92[CHB][hapmap];1.00[JPT][hapmap] |
| rs6467088 | 0.91[ASN][1000 genomes] |
| rs6467089 | 0.93[ASN][1000 genomes] |
| rs6960925 | 0.84[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv529300 | chr7:125669493-126587858 | Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv1032938 | chr7:126067684-126587859 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv539119 | chr7:126067684-126587859 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 4 | nsv889187 | chr7:126219766-126478190 | Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer | Chromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
