Variant report

Variant	rs2079294
Chromosome Location	chr11:17209111-17209112
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:17200195..17203044-chr11:17207705..17210741,3	K562	blood:
2	chr11:17207589..17210389-chr11:17212889..17214960,2	MCF-7	breast:
3	chr11:17201544..17204843-chr11:17207859..17210741,3	K562	blood:
4	chr11:17206803..17209141-chr11:17217436..17220407,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467711	chr11:17027555-17320797	Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv553568	chr11:17027555-17320797	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv469762	chr11:17170690-17320691	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv482905	chr11:17170690-17320691	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv553569	chr11:17201219-17211182	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv553570	chr11:17203765-17210885	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3453719	chr11:17207776-17212474	Strong transcription Weak transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	esv3492050	chr11:17208176-17212624	Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
9	esv3492054	chr11:17208676-17212324	Strong transcription Genic enhancers Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
10	esv3453708	chr11:17208901-17211749	Strong transcription Weak transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
11	esv3365176	chr11:17209077-17211341	Genic enhancers Weak transcription Enhancers Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17156600-17219200	Weak transcription	HSMMtube	muscle
2	chr11:17158000-17215600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:17165200-17215200	Weak transcription	Rectal Smooth Muscle	rectum
4	chr11:17167400-17212600	Weak transcription	Stomach Smooth Muscle	stomach
5	chr11:17167400-17228000	Weak transcription	Fetal Thymus	thymus
6	chr11:17172600-17214600	Weak transcription	Fetal Brain Female	brain
7	chr11:17184800-17228800	Weak transcription	Esophagus	oesophagus
8	chr11:17185800-17212800	Weak transcription	Pancreas	Pancrea
9	chr11:17187000-17212600	Weak transcription	Brain Hippocampus Middle	brain
10	chr11:17187000-17228000	Weak transcription	Colonic Mucosa	Colon
11	chr11:17187200-17210000	Weak transcription	Psoas Muscle	Psoas
12	chr11:17187200-17210000	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr11:17187200-17212600	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr11:17187200-17214000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr11:17187200-17214200	Weak transcription	Right Ventricle	heart
16	chr11:17187200-17226800	Weak transcription	Small Intestine	intestine
17	chr11:17191000-17210000	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr11:17191000-17210200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr11:17191000-17220600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr11:17191200-17209800	Weak transcription	Fetal Muscle Leg	muscle
21	chr11:17191200-17210000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr11:17191200-17210000	Weak transcription	Fetal Muscle Trunk	muscle
23	chr11:17191200-17212200	Weak transcription	Primary hematopoietic stem cells	blood
24	chr11:17191200-17212400	Weak transcription	Primary B cells from peripheral blood	blood
25	chr11:17191200-17212600	Weak transcription	Duodenum Mucosa	Duodenum
26	chr11:17191200-17213000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr11:17191200-17213000	Weak transcription	Dnd41	blood
28	chr11:17191200-17227800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr11:17191400-17212800	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr11:17191400-17213000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr11:17191400-17214400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr11:17191600-17212200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr11:17191800-17212400	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr11:17191800-17212800	Weak transcription	Fetal Kidney	kidney
35	chr11:17192000-17214400	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr11:17192400-17214400	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr11:17192400-17217800	Weak transcription	Stomach Mucosa	stomach
38	chr11:17193200-17212400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr11:17193800-17213000	Weak transcription	NH-A	brain
40	chr11:17194000-17209800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr11:17194000-17210200	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr11:17194000-17212400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr11:17194000-17212400	Weak transcription	Hela-S3	cervix
44	chr11:17194000-17212600	Weak transcription	Placenta	Placenta
45	chr11:17194000-17212800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr11:17194000-17212800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr11:17194000-17212800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr11:17194000-17212800	Weak transcription	Ovary	ovary
49	chr11:17194000-17212800	Weak transcription	Right Atrium	heart
50	chr11:17194000-17212800	Weak transcription	Osteobl	bone

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